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update gh actions
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mdancho84 committed Jan 4, 2024
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74 changes: 18 additions & 56 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -41,35 +41,7 @@ jobs:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@v1
id: install-r
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}

- uses: r-lib/actions/setup-pandoc@v1

- name: Install pak and query dependencies
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
shell: Rscript {0}

- name: Restore R package cache
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
run: |
pak::local_system_requirements(execute = TRUE)
pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
shell: Rscript {0}
- uses: actions/checkout@v3

- name: Install miniconda r-gluonts env
uses: conda-incubator/setup-miniconda@v2
Expand All @@ -78,35 +50,25 @@ jobs:
python-version: 3.7.1
environment-file: _environment.yml

- name: Install dependencies
run: |
pak::local_install_dev_deps(upgrade = TRUE)
pak::pkg_install("rcmdcheck")
shell: Rscript {0}
- uses: r-lib/actions/setup-pandoc@v2

- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- uses: r-lib/actions/setup-r@v2
id: install-r
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- name: Check
env:
_R_CHECK_CRAN_INCOMING_: false
run: |
options(crayon.enabled = TRUE)
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
- uses: r-lib/actions/check-r-package@v2
with:
name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
path: check
upload-snapshots: true
70 changes: 31 additions & 39 deletions .github/workflows/pkgdown.yaml
Original file line number Diff line number Diff line change
@@ -1,57 +1,49 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches:
- main
- master
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:

name: pkgdown

jobs:
pkgdown:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

permissions:
contents: write
steps:
- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@v1
id: install-r
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v1
- uses: r-lib/actions/setup-pandoc@v2

- name: Install pak and query dependencies
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
shell: Rscript {0}
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- name: Restore R package cache
uses: actions/cache@v2
- uses: r-lib/actions/setup-r-dependencies@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
restore-keys: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
run: |
pak::local_system_requirements(execute = TRUE)
pak::pkg_system_requirements("pkgdown", execute = TRUE)
shell: Rscript {0}
extra-packages: any::pkgdown, local::.
needs: website

- name: Install dependencies
run: |
pak::local_install_dev_deps(upgrade = TRUE)
pak::pkg_install("pkgdown")
- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Install package
run: R CMD INSTALL .
- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs

- name: Build and deploy pkgdown site
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
66 changes: 45 additions & 21 deletions .github/workflows/pr-commands.yaml
Original file line number Diff line number Diff line change
@@ -1,55 +1,79 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
issue_comment:
types: [created]

name: Commands

jobs:
document:
if: startsWith(github.event.comment.body, '/document')
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }}
name: document
runs-on: macOS-latest
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/pr-fetch@v1
- uses: actions/checkout@v3

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@v1
- name: Install dependencies
run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::roxygen2
needs: pr-document

- name: Document
run: Rscript -e 'roxygen2::roxygenise()'
run: roxygen2::roxygenise()
shell: Rscript {0}

- name: commit
run: |
git config --local user.email "[email protected]"
git config --local user.name "GitHub Actions"
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add man/\* NAMESPACE
git commit -m 'Document'
- uses: r-lib/actions/pr-push@v1
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

style:
if: startsWith(github.event.comment.body, '/style')
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
name: style
runs-on: macOS-latest
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/pr-fetch@v1
- uses: actions/checkout@v3

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@v1

- uses: r-lib/actions/setup-r@v2

- name: Install dependencies
run: Rscript -e 'install.packages("styler")'
run: install.packages("styler")
shell: Rscript {0}

- name: Style
run: Rscript -e 'styler::style_pkg()'
run: styler::style_pkg()
shell: Rscript {0}

- name: commit
run: |
git config --local user.email "[email protected]"
git config --local user.name "GitHub Actions"
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add \*.R
git commit -m 'Style'
- uses: r-lib/actions/pr-push@v1
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
73 changes: 35 additions & 38 deletions .github/workflows/test-coverage.yaml
Original file line number Diff line number Diff line change
@@ -1,47 +1,21 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches:
- main
- master
branches: [main, master]
pull_request:
branches:
- main
- master
branches: [main, master]

name: test-coverage

jobs:
test-coverage:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
env:
RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@v1
id: install-r

- name: Install pak and query dependencies
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
shell: Rscript {0}

- name: Restore R package cache
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
restore-keys: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
run: |
pak::local_system_requirements(execute = TRUE)
pak::pkg_system_requirements("covr", execute = TRUE)
shell: Rscript {0}
- uses: actions/checkout@v3

- name: Install miniconda r-gluonts env
uses: conda-incubator/setup-miniconda@v2
Expand All @@ -50,12 +24,35 @@ jobs:
python-version: 3.7.1
environment-file: _environment.yml

- name: Install dependencies
run: |
pak::local_install_dev_deps(upgrade = TRUE)
pak::pkg_install("covr")
shell: Rscript {0}
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
needs: coverage

- name: Test coverage
run: covr::codecov()
run: |
covr::codecov(
quiet = FALSE,
clean = FALSE,
install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
)
shell: Rscript {0}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v3
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package

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