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Refactor mutation api #45

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merged 48 commits into from
Nov 13, 2024
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871ed0d
Merge remote-tracking branch 'origin/fix-pytests' into refactor-mutat…
hollandjg Oct 8, 2024
c3a5dff
Merge remote-tracking branch 'origin/update-paths' into refactor-muta…
hollandjg Oct 8, 2024
1f272e4
add start of atomic mutations file
hollandjg Oct 8, 2024
dcc8480
reformat
hollandjg Oct 8, 2024
843fc5b
fix typer
hollandjg Oct 8, 2024
58abee7
remove unused import
hollandjg Oct 8, 2024
74377a3
add new typevars
hollandjg Oct 9, 2024
45999ba
fix atomic doctests
hollandjg Oct 9, 2024
a8bd044
update tree labelling to not include a space after a label if there's…
hollandjg Oct 9, 2024
bf84cb9
reformat
hollandjg Oct 9, 2024
ead8dcb
replace specific prompt functions with one generic prompt and multipl…
hollandjg Oct 9, 2024
b71e41a
remove error checking – we want this version just to crash if there's…
hollandjg Oct 9, 2024
82bce06
add partial import
hollandjg Oct 9, 2024
5d6ac9a
remove unused sys import
hollandjg Oct 9, 2024
43989d0
use black version from environment
hollandjg Oct 9, 2024
05052af
Merge remote-tracking branch 'origin/main' into refactor-mutation-api
hollandjg Oct 9, 2024
707b460
Merge remote-tracking branch 'origin/fix-pytests' into refactor-mutat…
hollandjg Oct 9, 2024
cbe24a2
Merge branch 'fix-pytests' into refactor-mutation-api
hollandjg Oct 9, 2024
0666aeb
delete unneeded merge shellscript
hollandjg Oct 9, 2024
e9a394d
Merge branch 'refactor-mutation-api' of https://github.com/brown-ccv/…
hollandjg Oct 9, 2024
5b677b5
rename quit to end_experiment
hollandjg Oct 9, 2024
a8a47a1
add logger
hollandjg Oct 9, 2024
e869c07
update options for highlighting positions in the tree
hollandjg Oct 9, 2024
cfe390e
delete rejected options
hollandjg Oct 9, 2024
ee5b96f
udpate type annotation
hollandjg Oct 9, 2024
9c8e482
make behavior library iterable
hollandjg Oct 9, 2024
c195236
add logging config
hollandjg Oct 9, 2024
136a6f1
use new functions for experiment
hollandjg Oct 9, 2024
623dc8c
remove some extra variables
hollandjg Oct 9, 2024
e1abe71
simplify variable names
hollandjg Oct 9, 2024
521c314
add debugging
hollandjg Oct 9, 2024
bc4e835
add some extra serialization options for the tree
hollandjg Oct 9, 2024
b36935b
serialize all function arguments
hollandjg Oct 9, 2024
672d828
remove unused import
hollandjg Oct 9, 2024
6b736c5
remove unused import
hollandjg Oct 9, 2024
6431eb3
add option to include children in serialize tree
hollandjg Oct 9, 2024
9324a4d
add function to deserialize the library into objects
hollandjg Oct 9, 2024
5d2d43f
remove duplicated display_name
hollandjg Oct 9, 2024
1ee50d6
get ui wrapper working with new objects
hollandjg Oct 9, 2024
f84253f
replace name with display name
hollandjg Oct 9, 2024
aaf3386
delete overtaken mutate tree file
hollandjg Oct 9, 2024
9528f07
Merge branch 'main' into refactor-mutation-api
hollandjg Oct 10, 2024
db32799
remove unused import
hollandjg Oct 10, 2024
d7bfe84
Merge branch 'refactor-mutation-api' of https://github.com/brown-ccv/…
hollandjg Oct 10, 2024
99cf31e
reformat
hollandjg Oct 10, 2024
b282737
fix deserialize tests
hollandjg Oct 10, 2024
a0c6135
fix setting black formatter as deafult for python
hollandjg Oct 10, 2024
b48da84
remove unused config for black
hollandjg Oct 10, 2024
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1 change: 1 addition & 0 deletions .devcontainer/devcontainer.json
Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,5 @@
"ms-python.black-formatter"
]
}
}
}
1 change: 1 addition & 0 deletions .vscode/settings.json
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
{
"editor.defaultFormatter": "ms-python.black-formatter",
"black-formatter.importStrategy": "fromEnvironment",
"editor.formatOnSave": true,
"python.testing.pytestArgs": [
"."
Expand Down
1 change: 0 additions & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -126,4 +126,3 @@ addopts = "--doctest-modules"

[tool.black]
target-version = ['py311']

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