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MAINT: Testing Ifs in workflow to test multiple OS
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name: Unit tests | ||
name: Unit tests | ||
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on: | ||
push: | ||
branches: ['**'] | ||
pull_request: | ||
branches: ['**'] | ||
on: | ||
push: | ||
branches: ['**'] | ||
pull_request: | ||
branches: ['**'] | ||
|
||
jobs: | ||
build: | ||
jobs: | ||
build: | ||
|
||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
os: [macos-latest] | ||
python-version: [3.8, 3.9, "3.10"] | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
os: [ubuntu-latest,macos-latest] | ||
python-version: [3.8] | ||
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||
steps: | ||
- uses: actions/checkout@v4 | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
activate-environment: test | ||
python-version: ${{ matrix.python-version }} | ||
fetch-depth: 2 | ||
- name: Install dependencies | ||
shell: bash -el {0} | ||
run: | | ||
python -m pip install --upgrade pip | ||
conda install --yes -c conda-forge mpi4py openmpi | ||
- name: Install HNN-core | ||
shell: bash -el {0} | ||
run: | | ||
pip install --verbose '.[opt, parallel, test, gui]' | ||
- name: Lint with flake8 | ||
shell: bash -el {0} | ||
run: | | ||
flake8 --count hnn_core | ||
- name: Test with pytest | ||
shell: bash -el {0} | ||
run: | | ||
python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml | ||
- name: Upload coverage to Codecov | ||
shell: bash -el {0} | ||
run: | | ||
bash <(curl -s https://codecov.io/bash) -f ./coverage.xml | ||
steps: | ||
- uses: actions/checkout@4 | ||
|
||
- name: Install Ubuntu System dependencies | ||
if: matrix.os == 'ubuntu-latest' | ||
shell: bash -el {0} | ||
run: | | ||
sudo add-apt-repository ppa:ubuntu-toolchain-r/test | ||
sudo apt-get update | ||
sudo apt-get install libopenmpi-dev openmpi-bin | ||
- name: Activate conda environment for macOS | ||
if: matrix.os == 'macos-latest' | ||
uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
activate-environment: test | ||
python-version: ${{ matrix.python-version }} | ||
fetch-depth: 2 | ||
|
||
- name: Activate Python environment for Ubuntu | ||
if: matrix.os == 'ubuntu-latest' | ||
uses: actions/setup-python@v5 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
|
||
- name: Install Python dependencies | ||
shell: bash -el {0} | ||
run: | | ||
if [ ${{ matrix.os }} == 'macos-latest' ]; then | ||
python -m pip install --upgrade pip | ||
conda install --yes -c conda-forge mpi4py openmpi | ||
elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | ||
python -m pip install --upgrade pip | ||
python -m pip install mpi4py | ||
fi | ||
- name: Install HNN-core | ||
shell: bash -el {0} | ||
run: | | ||
pip install --verbose '.[opt, parallel, test, gui]' | ||
- name: Lint with flake8 | ||
shell: bash -el {0} | ||
run: | | ||
flake8 --count hnn_core | ||
- name: Test with pytest | ||
shell: bash -el {0} | ||
run: | | ||
python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml | ||
- name: Upload coverage to Codecov | ||
shell: bash -el {0} | ||
run: | | ||
bash <(curl -s https://codecov.io/bash) -f ./coverage.xml |