back to numprocs=2 #105
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Unit tests | |
on: | |
push: | |
branches: ['**'] | |
pull_request: | |
branches: ['**'] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
python-version: [3.8] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install ubuntu dependencies | |
shell: bash -el {0} | |
run: | | |
sudo DEBIAN_FRONTEND=noninteractive apt-get update | |
sudo DEBIAN_FRONTEND=noninteractive apt-get install libopenmpi-dev openmpi-bin | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: test | |
python-version: ${{ matrix.python-version }} | |
fetch-depth: 2 | |
- name: Install dependencies | |
shell: bash -el {0} | |
run: | | |
python -m pip install --upgrade pip | |
conda install --yes -c conda-forge mpi4py openmpi | |
- name: Install HNN-core | |
shell: bash -el {0} | |
run: | | |
pip install --verbose '.[opt, parallel, test, gui]' | |
#- name: Lint with flake8 | |
# shell: bash -el {0} | |
# run: | | |
# flake8 --count hnn_core | |
- name: Check MPI version | |
shell: bash -el {0} | |
run: | | |
mpiexec --version | |
- name: Test with pytest | |
shell: bash -el {0} | |
run: | | |
python -m pytest ./hnn_core/tests/test_dipole.py --cov=hnn_core --cov-report=xml -s | |
# - name: Upload coverage to Codecov | |
# shell: bash -el {0} | |
# run: | | |
# bash <(curl -s https://codecov.io/bash) -f ./coverage.xml |