ci: Limit test to one file to debug codecov issue. #27

	name: Unit tests

	on:
	push:
	branches: ['**']
	pull_request:
	branches: ['**']

	jobs:
	build:

	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: [3.8, 3.9]

	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: test
	python-version: ${{ matrix.python-version }}
	fetch-depth: 2
	- name: Install ubuntu dependencies
	shell: bash -el {0}
	run: \|
	if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
	sudo add-apt-repository ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install libopenmpi-dev openmpi-bin
	fi;
	- name: Install dependencies
	shell: bash -el {0}
	run: \|
	python -m pip install --upgrade pip
	conda install --yes -c conda-forge mpi4py openmpi
	- name: Install HNN-core
	shell: bash -el {0}
	run: \|
	pip install --verbose '.[opt, parallel, test, gui]'
	- name: Lint with flake8
	shell: bash -el {0}
	run: \|
	flake8 --count hnn_core
	- name: Test with pytest
	shell: bash -el {0}
	run: \|
	python -m pytest ./hnn_core/tests/test_io.py --cov=hnn_core hnn_core/tests/test_io.py --cov-report=xml
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	directory: ./
	fail_ci_if_error: true
	files: ./coverage.xml
	flags: unittests
	token: ${{ secrets.CODECOV_TOKEN }}

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