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1 cpu for rescue me dels
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epiercehoffman committed Oct 22, 2024
1 parent 6f5386f commit 132a097
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions wdl/CleanVcfChromosome.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -620,14 +620,10 @@ task RescueMobileElementDeletions {
}
Float input_size = size(vcf, "GiB")
# disk is cheap, read/write speed is proportional to disk size, and disk IO is a significant time factor:
# in tests on large VCFs, memory usage is ~1.0 * input VCF size
# the biggest disk usage is at the end of the task, with input + output VCF on disk
Int cpu_cores = 2 # speed up compression / decompression of VCFs
RuntimeAttr runtime_default = object {
mem_gb: 3.75 + input_size * 1.5,
disk_gb: ceil(100.0 + input_size * 3.0),
cpu_cores: cpu_cores,
cpu_cores: 1,
preemptible_tries: 3,
max_retries: 1,
boot_disk_gb: 10
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