prep for release

brentp · Jan 8, 2019 · 2a0cf9e · 2a0cf9e
1 parent 7cf4fb3
commit 2a0cf9e
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/docker/docker-build.sh b/docker/docker-build.sh
@@ -95,6 +95,9 @@ chmod +x /usr/local/bin/duphold
 wget -qO /usr/bin/gsort https://github.com/brentp/gsort/releases/download/v0.0.6/gsort_linux_amd64
 chmod +x /usr/bin/gsort
 
+wget -qO /usr/bin/bpbio https://github.com/brentp/bpbio/releases/download/v0.1.1/bpbio
+chmod +x /usr/bin/bpbio
+
 wget -qO /usr/bin/gargs https://github.com/brentp/gargs/releases/download/v0.3.9/gargs_linux
 chmod +x /usr/bin/gargs
 

diff --git a/scripts/evaluation.sh b/scripts/evaluation.sh
@@ -31,11 +31,9 @@ tabix HG002_SVs_Tier1_v0.6.DEL.vcf.gz
 
 #smoove_cmd=go run cmd/smoove/smoove.go
 version=dev
-smoove_cmd=./smoove_022
-version=v0.2.2
 
 rm -rf evaluation-$version
-$smoove_cmd call --genotype -o evaluation-$version/ -x -p 4 -f $fasta -n testing $cram
+go run cmd/smoove/smoove.go call --genotype -o evaluation-$version/ -x -p 4 -f $fasta -n testing $cram
 
 bcftools view -i 'SVTYPE="DEL"' evaluation-$version/testing-smoove.genotyped.vcf.gz -O z -o evaluation-$version/testing-smoove.genotyped.DEL.vcf.gz
 tabix evaluation-$version/testing-smoove.genotyped.DEL.vcf.gz