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removing commented parts from bican_biolink #99

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Dec 4, 2024
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removing commented parts from bican_biolink #99

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268 changes: 0 additions & 268 deletions linkml-schema/bican_biolink.yaml
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Expand Up @@ -532,274 +532,6 @@ types:
typeof: string
base: str
uri: xsd:string
# string:
# name: string
# definition_uri: https://w3id.org/linkml/String
# description: A character string
# notes:
# - In RDF serializations, a slot with range of string is treated as a literal or
# type xsd:string. If you are authoring schemas in LinkML YAML, the type is
# referenced with the lower case "string".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Text
# base: str
# uri: xsd:string
# integer:
# name: integer
# definition_uri: https://w3id.org/linkml/Integer
# description: An integer
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "integer".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Integer
# base: int
# uri: xsd:integer
# boolean:
# name: boolean
# definition_uri: https://w3id.org/linkml/Boolean
# description: A binary (true or false) value
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "boolean".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Boolean
# base: Bool
# uri: xsd:boolean
# repr: bool
# float:
# name: float
# definition_uri: https://w3id.org/linkml/Float
# description: A real number that conforms to the xsd:float specification
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "float".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Float
# base: float
# uri: xsd:float
# double:
# name: double
# definition_uri: https://w3id.org/linkml/Double
# description: A real number that conforms to the xsd:double specification
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "double".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# close_mappings:
# - schema:Float
# base: float
# uri: xsd:double
# decimal:
# name: decimal
# definition_uri: https://w3id.org/linkml/Decimal
# description: A real number with arbitrary precision that conforms to the xsd:decimal
# specification
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "decimal".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# broad_mappings:
# - schema:Number
# base: Decimal
# uri: xsd:decimal
# time:
# name: time
# definition_uri: https://w3id.org/linkml/Time
# description: A time object represents a (local) time of day, independent of any
# particular day
# notes:
# - URI is dateTime because OWL reasoners do not work with straight date or time
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "time".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Time
# base: XSDTime
# uri: xsd:time
# repr: str
# date:
# name: date
# definition_uri: https://w3id.org/linkml/Date
# description: a date (year, month and day) in an idealized calendar
# notes:
# - URI is dateTime because OWL reasoners don't work with straight date or time
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "date".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:Date
# base: XSDDate
# uri: xsd:date
# repr: str
# datetime:
# name: datetime
# definition_uri: https://w3id.org/linkml/Datetime
# description: The combination of a date and time
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "datetime".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# exact_mappings:
# - schema:DateTime
# base: XSDDateTime
# uri: xsd:dateTime
# repr: str
# date_or_datetime:
# name: date_or_datetime
# definition_uri: https://w3id.org/linkml/DateOrDatetime
# description: Either a date or a datetime
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "date_or_datetime".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: str
# uri: linkml:DateOrDatetime
# repr: str
# uriorcurie:
# name: uriorcurie
# definition_uri: https://w3id.org/linkml/Uriorcurie
# description: a URI or a CURIE
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "uriorcurie".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: URIorCURIE
# uri: xsd:anyURI
# repr: str
# curie:
# name: curie
# definition_uri: https://w3id.org/linkml/Curie
# conforms_to: https://www.w3.org/TR/curie/
# description: a compact URI
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "curie".
# comments:
# - in RDF serializations this MUST be expanded to a URI
# - in non-RDF serializations MAY be serialized as the compact representation
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: Curie
# uri: xsd:string
# repr: str
# uri:
# name: uri
# definition_uri: https://w3id.org/linkml/Uri
# conforms_to: https://www.ietf.org/rfc/rfc3987.txt
# description: a complete URI
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "uri".
# comments:
# - in RDF serializations a slot with range of uri is treated as a literal or type
# xsd:anyURI unless it is an identifier or a reference to an identifier, in which
# case it is translated directly to a node
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# close_mappings:
# - schema:URL
# base: URI
# uri: xsd:anyURI
# repr: str
# ncname:
# name: ncname
# definition_uri: https://w3id.org/linkml/Ncname
# description: Prefix part of CURIE
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "ncname".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: NCName
# uri: xsd:string
# repr: str
# objectidentifier:
# name: objectidentifier
# definition_uri: https://w3id.org/linkml/Objectidentifier
# description: A URI or CURIE that represents an object in the model.
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "objectidentifier".
# comments:
# - Used for inheritance and type checking
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: ElementIdentifier
# uri: shex:iri
# repr: str
# nodeidentifier:
# name: nodeidentifier
# definition_uri: https://w3id.org/linkml/Nodeidentifier
# description: A URI, CURIE or BNODE that represents a node in a model.
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "nodeidentifier".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: NodeIdentifier
# uri: shex:nonLiteral
# repr: str
# jsonpointer:
# name: jsonpointer
# definition_uri: https://w3id.org/linkml/Jsonpointer
# conforms_to: https://datatracker.ietf.org/doc/html/rfc6901
# description: A string encoding a JSON Pointer. The value of the string MUST conform
# to JSON Point syntax and SHOULD dereference to a valid object within the current
# instance document when encoded in tree form.
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "jsonpointer".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: str
# uri: xsd:string
# repr: str
# jsonpath:
# name: jsonpath
# definition_uri: https://w3id.org/linkml/Jsonpath
# conforms_to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html
# description: A string encoding a JSON Path. The value of the string MUST conform
# to JSON Point syntax and SHOULD dereference to zero or more valid objects within
# the current instance document when encoded in tree form.
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "jsonpath".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: str
# uri: xsd:string
# repr: str
# sparqlpath:
# name: sparqlpath
# definition_uri: https://w3id.org/linkml/Sparqlpath
# conforms_to: https://www.w3.org/TR/sparql11-query/#propertypaths
# description: A string encoding a SPARQL Property Path. The value of the string
# MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects
# within the current instance document when encoded as RDF.
# notes:
# - If you are authoring schemas in LinkML YAML, the type is referenced with the
# lower case "sparqlpath".
# from_schema: https://w3id.org/linkml/types
# imported_from: linkml:types
# base: str
# uri: xsd:string
# repr: str
slots:
has attribute:
name: has attribute
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