Merge pull request #136 from djarecka/ci/new_linkml

fixing: testing software GA
brain-bican · Jan 17, 2025 · d61b80f · d61b80f
2 parents 9953688 + 9728ada
commit d61b80f
Showing 1 changed file with 17 additions and 16 deletions.
diff --git a/.github/workflows/reusable-generate_other_formats_new.yaml b/.github/workflows/reusable-generate_other_formats_new.yaml
@@ -50,26 +50,27 @@ jobs:
   generate:
     runs-on: ubuntu-latest
     needs: [setup-environment]
-    strategy:
-      matrix:
-        name: ${{ fromJson(format('["{0}"]', replace(inputs.model_name, ',', '","'))) }}
     steps:
       - name: Generate other model representations
         run: |
           cd linkml-schema
-          echo "Processing ${{ matrix.name }} model...";
-          linkml generate json-schema ${{ matrix.name }}.yaml > ../json-schema-autogen/${{ matrix.name }}.json;
-          # generating jsonld context and removing generation_date field to avoid constant updates
-          linkml generate jsonld-context ${{ matrix.name }}.yaml > ../jsonld-context-autogen/${{ matrix.name }}.context.jsonld;
-          sed -i "/generation_date/d" ../jsonld-context-autogen/${{ matrix.name }}.context.jsonld;
-          linkml generate pydantic ${{ matrix.name }}.yaml > ../models_py-autogen/${{ matrix.name }}.py;
-          linkml generate owl ${{ matrix.name }}.yaml > ../owl-autogen/${{ matrix.name }}.owl;
-          if [ ${{ matrix.name }} = "library_generation" ] || [ ${{ matrix.name }} = "genome_annotation" ]; then
-            echo "Fixing erdiagrams for ${{ matrix.name }}";
-            python ../utils/fix_and_create_erdiagram.py;
-          else
-            linkml generate erdiagram ${{ matrix.name }}.yaml > ../erdiagram-autogen/${{ matrix.name }}.md;
-          fi
+          models_list="${{ inputs.model_name }}"
+          echo "Model list: $model_list"
+          for name in $(echo "$model_list" | tr ',' '\n'); do
+            echo "Processing $name model...";
+            linkml generate json-schema ${name}.yaml > ../json-schema-autogen/${name}.json;
+            # generating jsonld context and removing generation_date field to avoid constant updates
+            linkml generate jsonld-context ${name}.yaml > ../jsonld-context-autogen/${name}.context.jsonld;
+            sed -i "/generation_date/d" ../jsonld-context-autogen/${name}.context.jsonld;
+            linkml generate pydantic ${name}.yaml > ../models_py-autogen/${name}.py;
+            linkml generate owl ${name}.yaml > ../owl-autogen/${name}.owl;
+            if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ]; then
+              echo "Fixing erdiagrams for $name";
+              python ../utils/fix_and_create_erdiagram.py;
+            else
+              linkml generate erdiagram ${name}.yaml > ../erdiagram-autogen/${name}.md;
+            fi
+          done
           cd ..
   push-changes:
     runs-on: ubuntu-latest