testing library generation #23
Workflow file for this run
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| name: generating yaml file | |
| on: | |
| push: | |
| paths: | |
| - 'linkml-schema/source_library_generation/**' | |
| pull_request: | |
| paths: | |
| - 'linkml-schema/source_library_generation/**' | |
| permissions: | |
| contents: write | |
| jobs: | |
| generate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout this repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Ensure full history is fetched | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install the required python packages | |
| run: | | |
| python -m pip install .[test] | |
| pip install git+https://github.com/brain-bican/bkbit.git | |
| pip install git+https://github.com/linkml/schemasheets.git@649af7e1 | |
| - name: Other installations | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential git wget curl | |
| - name: Generate yaml model | |
| run: | | |
| cd linkml-schema | |
| bkbit schema2model -o library_generation.yaml --gsheet --gsheet-download-dir source_library_generation/gsheet_output source_library_generation/gsheet.yaml --no-inlined | |
| cd .. | |
| - name: Adding other model representations to git | |
| # this might fail when running in PR mode because of the git push | |
| # but the files should be added since it's also run on push | |
| continue-on-error: true | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| if ! git ls-files --error-unmatch linkml-schema/library_generation.yaml; then | |
| git add linkml-schema/library_generation.yaml | |
| git add linkml-schema/source_library_generation/gsheet_output | |
| git commit -m "adding a new linkml model" | |
| elif ! git diff --quiet; then | |
| git add linkml-schema/library_generation.yaml | |
| git add linkml-schema/source_library_generation/gsheet_output | |
| git commit -m "generate new version of the linkml model" | |
| git push | |
| else | |
| echo "No changes to commit" | |
| fi |