MAINT: move CheckM action to a brand new plugin (q2-checkm)

Makefile

@@ -16,13 +16,9 @@ test-cov: all
 	coverage xml
 
 install: all
-	bash install-pplacer.sh
-	pip install git+https://github.com/Ecogenomics/CheckM.git@d74bb68d48b2318542eb7137343196d8e12b4fac
 	$(PYTHON) setup.py install
 
 dev: all
-	bash install-pplacer.sh
-	pip install git+https://github.com/Ecogenomics/CheckM.git@d74bb68d48b2318542eb7137343196d8e12b4fac
 	pip install -e .
 
 clean: distclean

ci/recipe/meta.yaml

@@ -9,37 +9,26 @@ source:
   path: ../..
 
 build:
-  script: |
-    make VERBOSE=1
-    make install
+  script: make install
 
 requirements:
   host:
     - python {{ python }}
     - setuptools
 
   run:
-    - altair
-    - hmmer
-    - matplotlib
     - metabat2
-    - numpy
-    - prodigal
-    - pysam
     - samtools
     - qiime2 {{ qiime2_epoch }}.*
     - q2-types-genomics {{ qiime2_epoch }}.*
-    - q2templates {{ qiime2_epoch }}.*
 
 test:
   requires:
     - coverage
     - pytest-cov
-
   imports:
     - q2_moshpit
     - qiime2.plugins.moshpit
-
   commands:
     - pytest --cov q2_moshpit --pyargs q2_moshpit
 

q2_moshpit/__init__.py

@@ -6,11 +6,10 @@
 # The full license is in the file LICENSE, distributed with this software.
 # ----------------------------------------------------------------------------
 
-from .checkm import checkm
 from .metabat2 import metabat2
 
 from ._version import get_versions
 __version__ = get_versions()['version']
 del get_versions
 
-__all__ = ['checkm', 'metabat2']
+__all__ = ['metabat2']