ENH: add action to extract a specific annotation into a feature table #178
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Update 'extract_annotations' action
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #178 +/- ##
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+ Coverage 98.50% 98.56% +0.06%
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Files 85 85
Lines 4679 4882 +203
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+ Hits 4609 4812 +203
Misses 70 70 ☔ View full report in Codecov by Sentry. |
misialq
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ChristosMatzoros
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ChristosMatzoros
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Aug 29, 2024
ChristosMatzoros
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Aug 30, 2024
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Hey @misialq, thanks for making the changes. It looks great! 🚀
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This PR introduces two new actions:
extract-annotationswhich can accept aGenomeData[NOG]artifact and extract the specified annotation (e.g. KEGG_pathways) into a new feature tablemultiply-tableswhich can take two feature tables (with matching dimensions) and return their dot product - here the use case is calculating per-sample counts of annotation features extracted with the action 1. by getting the dot product of that table and the MAG abundance feature table which can be obtained from an action in ENH: add action to estimate MAG abundance #177.