ENH: add support for nt kraken database (#150)

bokulich-lab · Apr 16, 2024 · d45c699 · d45c699
1 parent bb59874
commit d45c699
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/q2_moshpit/kraken2/database.py b/q2_moshpit/kraken2/database.py
@@ -41,6 +41,7 @@
     "pluspfp8": "pluspfp_08gb",
     "pluspfp16": "pluspfp_16gb",
     "eupathdb": "eupathdb48",
+    "nt": "nt",
     "greengenes": "Greengenes13.5",
     "rdp": "RDP11.5",
     "silva132": "Silva132",

diff --git a/q2_moshpit/plugin_setup.py b/q2_moshpit/plugin_setup.py
@@ -310,7 +310,7 @@
             ['viral', 'minusb', 'standard', 'standard8',
              'standard16', 'pluspf', 'pluspf8', 'pluspf16',
              'pluspfp', 'pluspfp8', 'pluspfp16', 'eupathdb',
-             "greengenes", "rdp", "silva132", "silva138"],
+             'nt', 'greengenes', 'rdp', 'silva132', 'silva138'],
         ),
         'threads': Int % Range(1, None),
         'kmer_len': Int % Range(1, None),