Merge pull request #14 from VinzentRisch/13_modify_env_file

MAINT: Modified environments file

.github/workflows/ci.yml

@@ -7,7 +7,7 @@ on:
     branches: ["main"]
 
 jobs:
-  build-and-test-qiime2-tiny-2024-10:
+  build-and-test-qiime2-pathogenome-2024-10:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -19,8 +19,8 @@ jobs:
     - name: Set up Conda
       uses: conda-incubator/setup-miniconda@v3
       with:
-        activate-environment: q2-amrfinderplus-qiime2-tiny-2024.10
-        environment-file: environments/q2-amrfinderplus-qiime2-tiny-2024.10.yml
+        activate-environment: q2-amrfinderplus-qiime2-pathogenome-2024.10
+        environment-file: environments/q2-amrfinderplus-qiime2-pathogenome-2024.10.yml
         auto-activate-base: false
 
     - name: Install plugin

environments/q2-amrfinderplus-qiime2-pathogenome-2024.10.yml

@@ -0,0 +1,9 @@
+channels:
+- https://packages.qiime2.org/qiime2/2024.10/pathogenome/released
+- conda-forge
+- bioconda
+dependencies:
+  - qiime2-pathogenome
+  - pip
+  - pip:
+     - "q2-amrfinderplus @ git+https://github.com/bokulich-lab/q2-amrfinderplus.git"