Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ENH: added --p-max-seq-len to extract-seq-segments and associated test code #209

Merged
merged 3 commits into from
Nov 19, 2024

Conversation

mikerobeson
Copy link
Collaborator

This PR adds to qiime rescript extract-seq-segments:

  • --p-max-seq-len: to prevent long reference segment sequences to be used for searching.
  • test_extract_seq_segments_min_max: tests setting --min-seq-len & --max-seq-len reference segment sequences.

@mikerobeson mikerobeson changed the title ENH: added --p-max-seq-len extract-seq-segments to and test code ENH: added --p-max-seq-len extract-seq-segments and test code Nov 4, 2024
@mikerobeson mikerobeson changed the title ENH: added --p-max-seq-len extract-seq-segments and test code ENH: added --p-max-seq-len to extract-seq-segments and associated test code Nov 4, 2024
Copy link
Contributor

@VinzentRisch VinzentRisch left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Hi @mikerobeson
Everything looks good to me, except for one suggestion below.

rescript/extract_seq_segments.py Outdated Show resolved Hide resolved
rescript/plugin_setup.py Outdated Show resolved Hide resolved
rescript/extract_seq_segments.py Outdated Show resolved Hide resolved
@mikerobeson
Copy link
Collaborator Author

Hi @VinzentRisch, I've incorporated your suggestions. Thank you so much for the review! :-)

Copy link
Contributor

@VinzentRisch VinzentRisch left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Yes great work! feel free to merge after you resolved the conflicts :)

@mikerobeson
Copy link
Collaborator Author

Merging and this PR based on comments from @VinzentRisch. 🎉

@mikerobeson mikerobeson merged commit 83c9c15 into bokulich-lab:master Nov 19, 2024
4 checks passed
@mikerobeson mikerobeson deleted the ess_max_length branch November 19, 2024 15:05
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants