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ENH: Adds ability to fetch GTDB v220 to get-gtdb-data #184

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merged 2 commits into from
Jun 5, 2024

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mikerobeson
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@mikerobeson mikerobeson commented Apr 25, 2024

Resolves issue #183.

Also includes a refactor of some code... That is, GTDB v220 now hosts the FASTA files as fna.gz, while files for the older versions of the database continue to be hosted as tar.gz.

@mikerobeson mikerobeson requested a review from nbokulich April 26, 2024 14:10
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thanks @mikerobeson ! Looks good to me. Ignore my inline comment.

The test failures are unrelated to this PR, so I will merge and we can fix those separately.

rescript/get_gtdb.py Show resolved Hide resolved
@nbokulich nbokulich merged commit 14dd23a into bokulich-lab:master Jun 5, 2024
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@mikerobeson mikerobeson deleted the add-gtdb-v220 branch July 15, 2024 18:52
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2 participants