more lint

bokulich-lab · Aug 20, 2024 · 3bcb792 · 3bcb792
1 parent 86427e1
commit 3bcb792
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Showing 3 changed files with 10 additions and 23 deletions.
diff --git a/rescript/plugin_setup.py b/rescript/plugin_setup.py
@@ -1301,15 +1301,16 @@
     outputs=[('metadata', ImmutableMetadata)],
     input_descriptions={},
     parameter_descriptions={
-        'data_type': 'BV-BCR data type. Check https://www.bv-brc.org/api/doc/ for '
-                     'documentation.',
-        'rql_query': 'Query in RQL format. Check https://www.bv-brc.org/api/doc/ for '
-                     'documentation.'
+        'data_type': 'BV-BCR data type. Check https://www.bv-brc.org/api/doc/ '
+                     'for documentation.',
+        'rql_query': 'Query in RQL format. Check '
+                     'https://www.bv-brc.org/api/doc/ for documentation.'
     },
     output_descriptions={
         'metadata': 'metadata'},
     name='Fetch BV-BCR metadata.',
-    description="Fetch BV-BCR metadata for a specific data type with an RQL query.",
+    description="Fetch BV-BCR metadata for a specific data type with an RQL "
+                "query.",
 )
 
 plugin.methods.register_function(
@@ -1364,7 +1365,8 @@
 
 },
     name='Fetch genome features from BV-BRC.',
-    description='Fetch DNA and protein sequences of genome features from BV-BRC.',
+    description='Fetch DNA and protein sequences of genome features from '
+                'BV-BRC.',
 )
 
 # Registrations

diff --git a/rescript/testing.py b/rescript/testing.py
diff --git a/rescript/tests/test_bv_brc.py b/rescript/tests/test_bv_brc.py
@@ -361,7 +361,7 @@ def test_fetch_metadata_bv_brc(self, mock_download_data,
         mock_metadata.return_value = mock_metadata_instance
 
         # Call the function
-        result = fetch_metadata_bv_brc(
+        fetch_metadata_bv_brc(
             data_type="genome",
             rql_query="genome_id=in(1,2)"
         )
@@ -405,7 +405,7 @@ def test_fetch_taxonomy_bv_brc(
         mock_download_data.return_value = mock_response
 
         # Prepare mocks for file output
-        with patch('builtins.open', unittest.mock.mock_open()) as mock_file:
+        with patch('builtins.open', unittest.mock.mock_open()):
             directory = fetch_taxonomy_bv_brc(
                 rql_query="taxon_id=in(taxon1,taxon2)",
                 ranks=['rank1', 'rank2'],