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Fixed a miss-ordering in the preconstructed models section where the …
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…imports of the PK/PD models and PK models were backwards. Added some addtional subsections to the ToC.?
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blakeaw committed May 23, 2023
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9 changes: 5 additions & 4 deletions README.md
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Expand Up @@ -13,6 +13,8 @@ PySB plugin package providing domain-specific macros and models for pharmacologi
4. [Documentation and Usage](#documentation-and-usage)
1. [Quick Overview](#quick-overview)
2. [Example](#example)
3. [List of macros](#list-of-macros)
4. [Preconstructed models](#preconstructed-models)
5. [Contact](#contact)
6. [Citing](#citing)

Expand Down Expand Up @@ -155,25 +157,24 @@ Dosing functions:
* `dose_bolus` - adds an instantaneous bolus dose of the specified drug/species, defining the initial concentration at time zero.
* `dose_infusion` - adds a continous (zero-order) infusion of the specified drug/species.

### Pre-constructed models
### Preconstructed models

In addition to the macros module, `pysb-pkpd` includes some pre-constructed two-compartment and three-compartment models.

#### PK/PD models

Two-compartment and three-compartment PK models with Emax PD function for the drug in the central compartment:
```python
from pysb.pkpd.pk_models import twocomp, threecomp
from pysb.pkpd.models import twocomp_emax, threecomp_emax
```

#### PK-only models

Two-compartment and three-compartment PK models:
```python
from pysb.pkpd.models import twocomp_emax, threecomp_emax
from pysb.pkpd.pk_models import twocomp, threecomp
```


------

# Contact
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