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removing seaborn as a dependency
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nandsra21 committed Mar 15, 2024
1 parent 03c515c commit bc04a0e
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Showing 2 changed files with 1 addition and 3 deletions.
3 changes: 1 addition & 2 deletions setup.py
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install_requires=['numpy',
'pandas',
"biopython",
'seaborn',
'scikit-learn >=1.3,<1.5',
'umap-learn ==0.5.*',
# Pin Numba at maximum supported version for the pinned umap-learn version.
# For more details see:
# https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-object-mode-fall-back-behaviour-when-using-jit
'numba <0.59.0',
'numba', # <0.59.0',
'matplotlib',
'hdbscan'
],
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1 change: 0 additions & 1 deletion src/pathogen_embed/pathogen_embed.py
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Expand Up @@ -16,7 +16,6 @@
import pandas as pd
import re
from scipy.spatial.distance import squareform, pdist
import seaborn as sns
from sklearn.decomposition import PCA
from sklearn.manifold import TSNE, MDS
import sys
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