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Update main.nf
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bixBeta committed May 1, 2024
1 parent 894f623 commit 82e27bf
Showing 1 changed file with 9 additions and 9 deletions.
18 changes: 9 additions & 9 deletions modules/macs2/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,9 +4,9 @@ process MACS2 {
tag "$id"
label "process_medium"

publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*narrowPeak"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*_peaks.xls"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*_summits.bed"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*narrowPeak"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*_peaks.xls"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*_summits.bed"



Expand Down Expand Up @@ -49,11 +49,11 @@ process MACS2ALL {
tag "allSamplesMergedPeakset"
label "process_medium"

publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*narrowPeak"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*_peaks.xls"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*_summits.bed"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "*saf"
publishDir "MACS2_peaks", mode: "move", overwrite: true, pattern: "allSamplesMergedPeakset.Annotated.saf"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*narrowPeak"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*_peaks.xls"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*_summits.bed"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "*saf"
publishDir "MACS2_peaks", mode: "copy", overwrite: true, pattern: "allSamplesMergedPeakset.Annotated.saf"

input:

Expand Down Expand Up @@ -105,7 +105,7 @@ process FRIP {
tag "$id"
label "process_high"

publishDir "rawCounts", mode: "symlink", overwrite: true, pattern: "*.readCountInPeaks.txt"
publishDir "rawCounts", mode: "copy", overwrite: true, pattern: "*.readCountInPeaks.txt"


input:
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