Use the proper CV term for library spectrum index

bittremieux-lab · Jul 2, 2020 · b5fb515 · b5fb515
1 parent 14c5b07
commit b5fb515
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/ann_solo/plot_ssm.py b/src/ann_solo/plot_ssm.py
@@ -81,7 +81,7 @@ def main():
     query_filename = os.path.abspath(os.path.join(
         query_uri.netloc, query_uri.path))
     ssm = ssms.loc[query_id]
-    library_id = ssm['opt_ms_run[1]_library_id']
+    library_id = ssm['opt_ms_run[1]_cv_MS:1003062_spectrum_index']
     library_uri = urlparse.urlparse(urlparse.unquote(ssm['database']))
     library_filename = os.path.abspath(os.path.join(
         library_uri.netloc, library_uri.path))

diff --git a/src/ann_solo/writer.py b/src/ann_solo/writer.py
@@ -121,7 +121,7 @@ def write_mztab(identifications: List[SpectrumSpectrumMatch], filename: str,
             'search_engine_score[2]', 'modifications', 'retention_time',
             'charge', 'exp_mass_to_charge', 'calc_mass_to_charge',
             'spectra_ref', 'pre', 'post', 'start', 'end',
-            'opt_ms_run[1]_library_id',
+            'opt_ms_run[1]_cv_MS:1003062_spectrum_index',
             'opt_ms_run[1]_cv_MS:1002217_decoy_peptide',
             'opt_ms_run[1]_num_candidates']) + '\n')
         # SSMs sorted by their query identifier.