Code

New template system for pathfinder#202

Code

Merged

tokebe merged 63 commits intomainbiothings/bte_trapi_query_graph_handler:mainfrom pathfinder-newsystembiothings/bte_trapi_query_graph_handler:pathfinder-newsystemCopy head branch name to clipboardAug 30, 2024

+208,864-34

Commits

Commits on Mar 21, 2024

• feat: add pathfinder templateGroups, templates for drug-disease

  colleenXu

  committed
  7ec573a

Commits on Mar 22, 2024

• feat: allow inferred explain-type queries

  

  tokebe

  authored and

  colleenXu

  committed
  8deeada

• Merge branch 'main' into pathfinder-templates

  colleenXu

  committed
  f52c0f8

Commits on Mar 23, 2024

• identify pathfinder queries. identify templates

  rjawesome

  committed
  52bc25d

Commits on Mar 26, 2024

• create pathfinder intermediate aux graphs & results

  rjawesome

  committed
  60dc949

• add kg edges to pathfinder

  rjawesome

  committed
  f8fe4e2

Commits on Mar 27, 2024

• score pathfinder results

  rjawesome

  committed
  9e1e0f7

Commits on Mar 28, 2024

• implementation of creative limit for pathfinder

  rjawesome

  committed
  bd77b6d

• Merge branch 'pathfinder-templates' into pathfinder

  rjawesome

  committed
  d12742e

• add debug statements

  rjawesome

  committed
  24eb56f

Commits on Mar 29, 2024

• code reorganization for pathfinder

  rjawesome

  committed
  f2832f0

Commits on Mar 30, 2024

• logs & telemetry

  rjawesome

  committed
  286dd47

Commits on Apr 2, 2024

• bugfix for couting ids

  rjawesome

  committed
  aa26be6

• testing / function reorganization

  rjawesome

  committed
  c94cdb5

• remove unnecessary types; creative mode bugfix

  rjawesome

  committed
  a1619c3

• use guard clauses for easier code readibility

  rjawesome

  committed
  7ff4daa

• variable names, cleaning up more loops

  rjawesome

  committed
  e4e1a3a

Commits on Apr 3, 2024

• Merge branch 'main' into pathfinder-templates

  colleenXu

  committed
  97092c3

• feat: add pathfinder templates for chem-gene

  colleenXu

  committed
  dd27a9d

• chore: remove extra predicate from pathfinder template

  colleenXu

  committed
  c9c9e8c

• feat: add pathfinder templates for disease-disease

  colleenXu

  committed
  6f84108

Commits on Apr 4, 2024

• Merge branch 'main' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder

  rjawesome

  committed
  b6aed6f

• Merge branch 'pathfinder-templates' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder

  rjawesome

  committed
  3cd3b90

• fix pathfinder improt

  rjawesome

  committed
  fd7bd75

• fix push call

  rjawesome

  committed
  080de45

Commits on Apr 5, 2024

• implement pruning for pathfinder

  rjawesome

  committed
  4a119a2

• fix aux graph for main edge

  rjawesome

  committed
  fbd4558

• feat: add pathfinder gene-disease templates

  colleenXu

  committed
  2fc3fda

• Merge branch 'pathfinder-templates' into pathfinder

  colleenXu

  committed
  1faf114

Commits on Apr 6, 2024

• fix node in PF edge

  rjawesome

  committed
  be78fec

• more pathfinder testing

  rjawesome

  committed
  576721e

• Merge branch 'pathfinder' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder

  rjawesome

  committed
  79a66d6

Commits on Apr 11, 2024

• chore: fix error with missing pathfinder flag for one group

  colleenXu

  committed
  f861412

Commits on Apr 17, 2024

• fix aux graph while loop

  rjawesome

  committed
  82bd2d6

• Merge branch 'main' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder

  tokebe

  committed
  78c0c84

Commits on Apr 18, 2024

• make aux graphs more efficient

  rjawesome

  committed
  e1ab149

Commits on Apr 19, 2024

• Analyze aux graphs individually

  rjawesome

  committed
  715c1c9

Commits on May 3, 2024

• fix: support graph suffixes

  rjawesome

  committed
  88bad1e

Commits on May 11, 2024

• add pruning test

  rjawesome

  committed
  894bbb0

Commits on Jul 23, 2024

• feat: add initial tables for pathfinder refactor

  colleenXu

  committed
  7c33fc0

• load pf tables & generate templates

  rjawesome

  committed
  5e572de

Commits on Jul 24, 2024

• merge predicates/categories for each template

  rjawesome

  committed
  88900c9

Commits on Jul 25, 2024

• use related_to for empty rpedicate

  rjawesome

  committed
  ed7f41b

• run templates from pf template generator

  rjawesome

  committed
  5c8c670

• feat: change format of predicates table

  colleenXu

  committed
  78afb32

Commits on Jul 26, 2024

• Merge branch 'pathfinder-newsystem' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder-newsystem

  rjawesome

  committed
  1445076

• update for new predicate table format

  rjawesome

  committed
  6d5a38f

• filter pf results by category

  rjawesome

  committed
  b405a25

Commits on Jul 30, 2024

• bugfix for adding related_to for missing predicates

  rjawesome

  committed
  a951463

• remove debug console.log

  rjawesome

  committed
  921642c

Commits on Aug 2, 2024

• delete predicates if not present

  rjawesome

  committed
  e54bb73

• add agent type/knowledge level to pathfinder

  rjawesome

  committed
  915598b

• add test for pathfinder template creator

  rjawesome

  committed
  67f6d62

Commits on Aug 6, 2024

• add more test cases for pf template generator

  rjawesome

  committed
  8055fa9

Commits on Aug 13, 2024

• Merge remote-tracking branch 'origin/main' into pathfinder-newsystem

  rjawesome

  committed
  2ff3a8b

Commits on Aug 29, 2024

• fix: template qualifiers

  tokebe

  committed
  567f392

• Merge branch 'main' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder-newsystem

  tokebe

  committed
  034d01f

• fix: reset totalRecords between templates

  tokebe

  committed
  3bd1de2

• fix: add fallback ancestors in pathfinder queries

  tokebe

  committed
  7e34f68

• fix: gene/protein conflation should work both ways

  tokebe

  committed
  a2c8a5b

• Merge branch 'main' of https://github.com/biothings/bte_trapi_query_graph_handler into pathfinder-newsystem

  tokebe

  committed
  3797d03

• fix: fallback ancestor handling, add logs

  tokebe

  committed
  e76cd73

• fix: ensure conflation is used in expandedCategories

  tokebe

  committed
  3d58df4