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Tmp fix #10

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merged 68 commits into from
May 10, 2021
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e5b3ca7
chore(release): 1.1.7
kevinxin90 Mar 25, 2021
1abf2e1
chore(release): 1.1.8
kevinxin90 Mar 26, 2021
2b8d57b
fix: :bug: fix wrong attribute type
kevinxin90 Mar 26, 2021
af3a3da
chore(release): 1.1.9
kevinxin90 Mar 26, 2021
56f9fbf
build: :arrow_up: upgrade call-apis package
kevinxin90 Mar 26, 2021
afa2c82
chore(release): 1.1.10
kevinxin90 Mar 26, 2021
2b80cd3
fix: :bug: fix typo in npm release script
kevinxin90 Mar 26, 2021
a333ae5
build: :arrow_up: upgrade id resolver package
kevinxin90 Mar 26, 2021
5943bee
chore(release): 1.2.0
kevinxin90 Mar 26, 2021
9e34876
fix: :bug: fix edge_metadata deepcopy issue
kevinxin90 Mar 26, 2021
0b6343a
chore(release): 1.2.1
kevinxin90 Mar 26, 2021
c009b10
build: :arrow_up: upgrade call-apis
kevinxin90 Mar 29, 2021
1cc2fca
chore(release): 1.2.2
kevinxin90 Mar 29, 2021
db58226
feat: :sparkles: upgrade to biolink 1.7.0
kevinxin90 Mar 29, 2021
06c680a
chore(release): 1.3.0
kevinxin90 Mar 29, 2021
523956e
test: :white_check_mark: fix broken test
kevinxin90 Mar 29, 2021
aaf831e
chore(release): 1.3.1
kevinxin90 Mar 29, 2021
1658ad2
feat: :sparkles: support trapi quer
kevinxin90 Mar 30, 2021
b72ff2b
refactor: :recycle: add predicates.json as file to be transpiled
kevinxin90 Mar 31, 2021
2cc704f
test: :white_check_mark: add a couple query examples for testing
kevinxin90 Mar 31, 2021
defdd65
feat: :sparkles: restrict to a list of APIs to use in BTE
kevinxin90 Mar 31, 2021
07688cb
feat: :sparkles: include TRAPI APIs when constructing meta-kg
kevinxin90 Mar 31, 2021
94c4f87
refactor: :recycle: update local smartapi specs
kevinxin90 Mar 31, 2021
02afc54
feat: :sparkles: support constructing TRAPI based bte edge
kevinxin90 Mar 31, 2021
138d45d
test: :white_check_mark: add integrity test
kevinxin90 Mar 31, 2021
18d96dc
build: :arrow_up: upgrade dependency
kevinxin90 Mar 31, 2021
1b351ff
chore(release): 1.4.0
kevinxin90 Mar 31, 2021
ac413e6
fix: :bug: should check for predidcatesPath param instead of smartapi…
kevinxin90 Apr 1, 2021
5213e18
style: :art: style code
kevinxin90 Apr 1, 2021
f378602
style: :art: style code
kevinxin90 Apr 1, 2021
9b58f62
build: :arrow_up: upgrade smartapi-kg dependency
kevinxin90 Apr 1, 2021
c83b3db
style: :art: style coee
kevinxin90 Apr 1, 2021
89e2b2d
chore(release): 1.5.0
kevinxin90 Apr 1, 2021
b89c288
feat: :sparkles: allow user to specify if they want to include reason…
kevinxin90 Apr 1, 2021
5f62eb8
refactor: :recycle: set default value of includeReasoner to be true
kevinxin90 Apr 1, 2021
9058c56
test: :white_check_mark: fix broken test due to addition of includeRe…
kevinxin90 Apr 1, 2021
76a5146
chore(release): 1.5.1
kevinxin90 Apr 1, 2021
54de5ab
refactor: :recycle: disable filter ops by preset API list
kevinxin90 Apr 2, 2021
24d4531
feat: support using providing a list of APIs to include
kevinxin90 Apr 2, 2021
ad63c6f
chore(release): 1.6.0
kevinxin90 Apr 2, 2021
ea6298a
chore: :recycle: add debug messages
kevinxin90 Apr 2, 2021
b941c63
style: :art: style code
kevinxin90 Apr 2, 2021
437321e
feat: :sparkles: support limiting ops from /predicates to user specif…
kevinxin90 Apr 2, 2021
ee0ffed
chore(release): 1.7.0
kevinxin90 Apr 2, 2021
4d1c3d4
feat: :sparkles: set a 3s timeout for all TRAPI APIs
kevinxin90 Apr 20, 2021
87f412e
feat: :sparkles: set a 3s timeout for all TRAPI APIs
kevinxin90 Apr 20, 2021
0e0c28e
style: :art: style code
kevinxin90 Apr 20, 2021
238bbd5
chore(release): 1.8.0
kevinxin90 Apr 20, 2021
011134c
feat: :sparkles: support biocarta pathway id
kevinxin90 Apr 23, 2021
dbedee7
chore(release): 1.9.0
kevinxin90 Apr 23, 2021
2b89a08
chore(release): 1.10.0
kevinxin90 Apr 23, 2021
fbe4735
fix: :bug: change NCBIGENE to NCBIGene, add RHEA
kevinxin90 Apr 27, 2021
4a2288e
chore(release): 1.11.0
kevinxin90 Apr 27, 2021
81d9335
test: :white_check_mark:
kevinxin90 Apr 27, 2021
892fac6
docs: :memo: update documentation to reflect changes on NCBIGene
kevinxin90 Apr 27, 2021
86b58dc
chore(release): 1.12.0
kevinxin90 Apr 27, 2021
cf647e4
refactor: :recycle: update local smartapi specs
kevinxin90 Apr 27, 2021
866703c
chore(release): 1.12.1
kevinxin90 Apr 27, 2021
c26b317
feat: :sparkles: expand predicate based on biolink model
kevinxin90 Apr 28, 2021
3ec3af2
test: :white_check_mark: update test for expanding predicates
kevinxin90 Apr 28, 2021
deb1a20
chore(release): 1.13.0
kevinxin90 Apr 28, 2021
7225437
style: :art: style code
kevinxin90 Apr 28, 2021
a11c012
refactor: :recycle: add debug message for expanded edges
kevinxin90 Apr 29, 2021
8862ca6
chore(release): 1.13.1
kevinxin90 Apr 29, 2021
6345571
feat: :sparkles: support expanding predicates based on biolink hierarchy
kevinxin90 Apr 29, 2021
ce1b9a4
chore(release): 1.14.0
kevinxin90 Apr 29, 2021
2e11108
build: :arrow_up: support customized transformation of EBI Protein API
kevinxin90 May 4, 2021
49e5878
chore(release): 1.15.0
kevinxin90 May 4, 2021
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2 changes: 1 addition & 1 deletion .github/workflows/npm-release.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: Publish @biothings-explorer/smartapi-kg Node.js Package to NPM registry
name: Publish @biothings-explorer/query_graph_handler Node.js Package to NPM registry

on:
push:
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122 changes: 122 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,128 @@

All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.

## [1.15.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.14.0...v1.15.0) (2021-05-04)

## [1.14.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.13.1...v1.14.0) (2021-04-29)


### Features

* :sparkles: support expanding predicates based on biolink hierarchy ([6345571](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/6345571e60998a403c946aabed2fc4a07d8ebbdd))

### [1.13.1](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.13.0...v1.13.1) (2021-04-29)

## [1.13.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.12.1...v1.13.0) (2021-04-28)


### Features

* :sparkles: expand predicate based on biolink model ([c26b317](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/c26b317d5b70dbe2ffc18dd1a7c324a2e13f581e))

### [1.12.1](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.12.0...v1.12.1) (2021-04-27)

## [1.12.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.11.0...v1.12.0) (2021-04-27)

## [1.11.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.10.0...v1.11.0) (2021-04-27)


### Bug Fixes

* :bug: change NCBIGENE to NCBIGene, add RHEA ([fbe4735](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/fbe473580e5a2a2611a9b723eac661bf6e1bb60b))

## [1.10.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.9.0...v1.10.0) (2021-04-23)

## [1.9.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.8.0...v1.9.0) (2021-04-23)


### Features

* :sparkles: support biocarta pathway id ([011134c](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/011134c188ccddfff2b0c5054fc2a769d424308f))

## [1.8.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.7.0...v1.8.0) (2021-04-20)


### Features

* :sparkles: set a 3s timeout for all TRAPI APIs ([87f412e](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/87f412eae73ef53f2ef118badad20daef5c9c615))
* :sparkles: set a 3s timeout for all TRAPI APIs ([4d1c3d4](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/4d1c3d49e61a446ff76cf7106671dbda794ea0a3))

## [1.7.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.6.0...v1.7.0) (2021-04-02)


### Features

* :sparkles: support limiting ops from /predicates to user specified api names ([437321e](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/437321e6f654627043a677e7d1268d169706b9b5))

## [1.6.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.5.1...v1.6.0) (2021-04-02)


### Features

* support using providing a list of APIs to include ([24d4531](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/24d45319dbe2eb12496d129517e0c3f977d8fad2))

### [1.5.1](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.5.0...v1.5.1) (2021-04-01)


### Features

* :sparkles: allow user to specify if they want to include reasoner apis ([b89c288](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/b89c288e0b6f72523d2f6e1c81af0468523b06d6))

## [1.5.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.4.0...v1.5.0) (2021-04-01)


### Bug Fixes

* :bug: should check for predidcatesPath param instead of smartapiPath ([ac413e6](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/ac413e6185cff37ed80eb76a5de1ae7cc1352d12))

## [1.4.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.3.1...v1.4.0) (2021-03-31)


### Features

* :sparkles: include TRAPI APIs when constructing meta-kg ([07688cb](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/07688cb93ebe13be61dd041d2c155a478dac5d5b))
* :sparkles: restrict to a list of APIs to use in BTE ([defdd65](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/defdd656f30a04af85e37ef525d05ec247cc659b))
* :sparkles: support constructing TRAPI based bte edge ([02afc54](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/02afc54bb71492cba9c0a311aef27a416798a8fa))
* :sparkles: support trapi quer ([1658ad2](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/1658ad2f77cbb8c41dba72c871bca595a4495d2f))

### [1.3.1](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.3.0...v1.3.1) (2021-03-29)

## [1.3.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.2.2...v1.3.0) (2021-03-29)


### Features

* :sparkles: upgrade to biolink 1.7.0 ([db58226](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/db58226e602e68f1eb638bc3221035a0c873b4e2))

### [1.2.2](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.2.1...v1.2.2) (2021-03-29)

### [1.2.1](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.2.0...v1.2.1) (2021-03-26)


### Bug Fixes

* :bug: fix edge_metadata deepcopy issue ([9e34876](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/9e3487693abd220f0f453ccc6d60c500a44e3caf))

## [1.2.0](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.10...v1.2.0) (2021-03-26)


### Bug Fixes

* :bug: fix typo in npm release script ([2b80cd3](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/2b80cd330032bc3539e2c494e69f238bf2e71eca))

### [1.1.10](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.9...v1.1.10) (2021-03-26)

### [1.1.9](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.8...v1.1.9) (2021-03-26)


### Bug Fixes

* :bug: fix wrong attribute type ([2b8d57b](https://github.com/kevinxin90/bte_trapi_query_graph_handler/commit/2b8d57b70df62aad2cbb7d79d9108bfe1f828234))

### [1.1.8](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.7...v1.1.8) (2021-03-26)

### [1.1.7](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.6...v1.1.7) (2021-03-25)

### [1.1.6](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.5...v1.1.6) (2021-03-25)

### [1.1.5](https://github.com/kevinxin90/bte_trapi_query_graph_handler/compare/v1.1.4...v1.1.5) (2021-03-25)
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