Merge pull request #170 from biothings/typescript

Migrate package to Typescript and new build system

.github/workflows/test_ws_codecov.yml

@@ -16,18 +16,24 @@ jobs:
     - uses: actions/checkout@v3
       with:
         repository: biothings/biothings_explorer
+        ref: ${{ steps.branch-name.outputs.current_branch }}
 
-    - name: Use Node.js 16.x
-      uses: actions/setup-node@v1
+    - name: Use Node.js 18.x
+      uses: actions/setup-node@v3
       with:
-        node-version: 16.x
+        node-version: 18.x
 
-    - name: npm install, generate coverage report
+    - name: Use pnpm
+      uses: pnpm/action-setup@v2
+      with:
+        version: 8
+
+    - name: pnpm install, generate coverage report
       run: |
-        npm run clone
-        npm run git checkout ${{ steps.branch-name.outputs.current_branch }}
-        npm i || true && npm i
-        npm run test-cov --workspace=@biothings-explorer/query_graph_handler
+        pnpm run clone
+        pnpm run git checkout ${{ steps.branch-name.outputs.current_branch }}
+        pnpm i
+        pnpm --filter query_graph_handler test-cov
 
     - name: Send coverage report to codecov for visualization
       uses: codecov/codecov-action@v3

.gitignore

@@ -47,6 +47,9 @@ typings/
 # TypeScript cache
 *.tsbuildinfo
 
+# Turbo cache
+.turbo
+
 # Optional npm cache directory
 .npm
 
@@ -104,4 +107,4 @@ dist
 .tern-port
 
 # Javascript build folder
-built/
+built/

README.md

@@ -8,7 +8,7 @@ A on-the-fly query engine for BioThings Explorer based on TRAPI Query Graph.
 ## Install
 
 ```bash
-npm i @biothings-explorer/query_graph_handler
+pnpm i @biothings-explorer/query_graph_handler
 ```
 
 ## Usage

__test__/integration/BatchEdgeQueryHandler.test.js → __test__/integration/BatchEdgeQueryHandler.test.ts

@@ -1,8 +1,8 @@
-const BatchEdgeQueryHandler = require('../../src/batch_edge_query');
-const meta_kg = require('@biothings-explorer/smartapi-kg');
+import BatchEdgeQueryHandler from '../../src/batch_edge_query';
+import MetaKG from '@biothings-explorer/smartapi-kg';
 
 describe('Testing BatchEdgeQueryHandler Module', () => {
-  const kg = new meta_kg.default();
+  const kg = new MetaKG();
   kg.constructMetaKGSync();
 
   describe('Testing query function', () => {