updated tests to work with new handler logic

biothings · Sep 8, 2021 · b2856d8 · b2856d8
1 parent 2378ec5
commit b2856d8
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Showing 7 changed files with 197 additions and 517 deletions.
diff --git a/__test__/integration/BatchEdgeQueryHandler.test.js b/__test__/integration/BatchEdgeQueryHandler.test.js
@@ -1,6 +1,3 @@
-const QNode = require("../../src/query_node");
-const QEdge = require("../../src/query_edge");
-const QExeEdge = require("../../src/query_execution_edge")
 const BatchEdgeQueryHandler = require("../../src/batch_edge_query");
 const meta_kg = require("@biothings-explorer/smartapi-kg");
 
@@ -9,18 +6,6 @@ describe("Testing BatchEdgeQueryHandler Module", () => {
     kg.constructMetaKGSync();
 
     describe("Testing query function", () => {
-        // test("test with one query edge", async () => {
-        //     let gene_node1 = new QNode("n1", { category: "Gene", id: "NCBIGene:1017" });
-        //     let chemical_node1 = new QNode("n3", { category: "SmallMolecule" });
-        //     const edge1 = new QEdge("e01", { subject: gene_node1, object: chemical_node1 });
-        //     const exeEdge1 = new QExeEdge(edge1, false, undefined);
-        //     const batchHandler = new BatchEdgeQueryHandler(kg);
-        //     batchHandler.setEdges([edge1]);
-        //     expect(chemical_node1.hasEquivalentIDs()).toEqual(false);
-        //     const res = await batchHandler.query([edge1]);
-        //     expect(res.length).toBeGreaterThan(1);
-        //     expect(chemical_node1.hasEquivalentIDs()).toEqual(true);
-        // })
 
         test("test subscribe and unsubscribe function", () => {
             const batchHandler = new BatchEdgeQueryHandler(kg);

diff --git a/__test__/integration/QEdge2BTEEdgeHandler.test.js b/__test__/integration/QEdge2BTEEdgeHandler.test.js
@@ -12,33 +12,16 @@ describe("Testing NodeUpdateHandler Module", () => {
             }
         }
     }
-    //gene_node1.setEquivalentIDs(node1_equivalent_ids);
-    const node2_equivalent_ids = {
-        "NCBIGene:1017": {
-            db_ids: {
-                NCBIGene: ["1017"],
-                SYMBOL: ['CDK2']
-            }
-        },
-        "NCBIGene:1018": {
-            db_ids: {
-                NCBIGene: ["1018"],
-                SYMBOL: ['CDK3']
-            }
-        }
-    }
+
     const gene_node2 = new QNode("n2", { categories: "Gene", ids: ["NCBIGene:1017", "NCBIGene:1018"] });
     const gene_node1_with_id_annotated = new QNode("n1", { categories: "Gene", ids: "NCBIGene:1017" });
     gene_node1_with_id_annotated.setEquivalentIDs(node1_equivalent_ids);
     //gene_node2.setEquivalentIDs(node2_equivalent_ids);
-    const invalid_node = new QNode("n3", { categories: "INVALID", curie: ["NCBIGene:1017", "NCBIGene:1018"] })
     const chemical_node1 = new QNode("n3", { categories: "SmallMolecule" });
-    const chemical_node2 = new QNode("n4", { categories: "SmallMolecule", curie: "CHEMBL.COMPUND:CHEMBL744" });
     const edge1 = new QEdge("e01", { subject: gene_node1, object: chemical_node1 });
     const edge2 = new QEdge("e02", { subject: gene_node1_with_id_annotated, object: chemical_node1 });
     const edge3 = new QEdge('e04', { subject: gene_node2, object: chemical_node1 });
     const edge4 = new QEdge('e05', { object: gene_node2, subject: chemical_node1 });
-    const invalid_edge = new QEdge("e03", { subject: invalid_node, object: chemical_node1 })
 
     describe("Testing _getCuries function", () => {
         test("test edge with one curie input return an array of one", () => {

diff --git a/__test__/integration/QueryEdge.test.js b/__test__/integration/QueryEdge.test.js
@@ -13,34 +13,16 @@ describe("Testing QueryEdge Module", () => {
             }
         }
     }
-    //gene_node1.setEquivalentIDs(node1_equivalent_ids);
-    const node2_equivalent_ids = {
-        "NCBIGene:1017": {
-            db_ids: {
-                NCBIGene: ["1017"],
-                SYMBOL: ['CDK2']
-            }
-        },
-        "NCBIGene:1018": {
-            db_ids: {
-                NCBIGene: ["1018"],
-                SYMBOL: ['CDK3']
-            }
-        }
-    }
+
     const gene_node2 = new QNode("n2", { categories: "Gene", ids: ["NCBIGene:1017", "NCBIGene:1018"] });
     const gene_node1_with_id_annotated = new QNode("n1", { categories: "Gene", ids: "NCBIGene:1017" });
     gene_node1_with_id_annotated.setEquivalentIDs(node1_equivalent_ids);
-    //gene_node2.setEquivalentIDs(node2_equivalent_ids);
-    const invalid_node = new QNode("n3", { categories: "INVALID", curie: ["NCBIGene:1017", "NCBIGene:1018"] })
     const chemical_node1 = new QNode("n3", { categories: "SmallMolecule" });
-    const chemical_node2 = new QNode("n4", { categories: "SmallMolecule", curie: "CHEMBL.COMPUND:CHEMBL744" });
     const edge1 = new QEdge("e01", { subject: gene_node1, object: chemical_node1 });
     const edge2 = new QEdge("e02", { subject: gene_node1_with_id_annotated, object: chemical_node1 });
     const edge3 = new QEdge('e04', { subject: gene_node2, object: chemical_node1 });
     const edge4 = new QEdge('e05', { object: gene_node2, subject: chemical_node1 });
     const edge5 = new QEdge('e06', { object: gene_node1_with_id_annotated, subject: chemical_node1 });
-    const invalid_edge = new QEdge("e03", { subject: invalid_node, object: chemical_node1 })
 
     describe("Testing isReversed function", () => {
         test("test if only the object of the edge has curie defined, should return true", () => {