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add test for pathfinder template creator
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| import generateTemplates from '../../src/inferred_mode/pf_template_generator'; | ||
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| describe('Test Pathfinder Template Generator', () => { | ||
| test('Should generate correct templates', async () => { | ||
| const sub = { | ||
| categories: ['biolink:Drug'] | ||
| }; | ||
| const un = { | ||
| categories: ['biolink:Gene'] | ||
| }; | ||
| const obj = { | ||
| categories: ['biolink:Disease'] | ||
| }; | ||
|
|
||
| const templates = await generateTemplates(sub, un, obj); | ||
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||
| // Template A | ||
| expect(templates[0]).toEqual({ | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": [ | ||
| "biolink:Drug" | ||
| ] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories": [ | ||
| "biolink:Disease" | ||
| ] | ||
| }, | ||
| "un": { | ||
| "categories": [ | ||
| "biolink:Gene" | ||
| ] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "sub_un": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "un", | ||
| "predicates": [ | ||
| "biolink:regulates", | ||
| "biolink:regulated_by", | ||
| "biolink:affects", | ||
| "biolink:affected_by", | ||
| "biolink:interacts_with", | ||
| "biolink:associated_with" | ||
| ] | ||
| }, | ||
| "un_obj": { | ||
| "subject": "un", | ||
| "object": "creativeQueryObject", | ||
| "predicates": [ | ||
| "biolink:gene_associated_with_condition", | ||
| "biolink:biomarker_for", | ||
| "biolink:affects", | ||
| "biolink:contributes_to" | ||
| ] | ||
| } | ||
| } | ||
| }); | ||
|
|
||
| // Template B | ||
| expect(templates[1]).toEqual({ | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": [ | ||
| "biolink:Drug" | ||
| ] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories": [ | ||
| "biolink:Disease" | ||
| ] | ||
| }, | ||
| "un": { | ||
| "categories": [ | ||
| "biolink:Gene" | ||
| ] | ||
| }, | ||
| "nb": { | ||
| "categories": [ | ||
| "biolink:AnatomicalEntity", | ||
| "biolink:BiologicalProcessOrActivity", | ||
| "biolink:ChemicalEntity" | ||
| ] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "sub_un": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "un", | ||
| "predicates": [ | ||
| "biolink:regulates", | ||
| "biolink:regulated_by", | ||
| "biolink:affects", | ||
| "biolink:affected_by", | ||
| "biolink:interacts_with", | ||
| "biolink:associated_with" | ||
| ] | ||
| }, | ||
| "un_b": { | ||
| "subject": "un", | ||
| "object": "nb", | ||
| "predicates": [ | ||
| "biolink:related_to_at_instance_level", | ||
| "biolink:affects", | ||
| "biolink:contributes_to", | ||
| "biolink:participates_in", | ||
| "biolink:regulates", | ||
| "biolink:regulated_by", | ||
| "biolink:affected_by", | ||
| "biolink:interacts_with", | ||
| "biolink:correlated_with" | ||
| ] | ||
| }, | ||
| "b_obj": { | ||
| "subject": "nb", | ||
| "object": "creativeQueryObject", | ||
| "predicates": [ | ||
| "biolink:related_to_at_instance_level", | ||
| "biolink:affects", | ||
| "biolink:affected_by", | ||
| "biolink:occurs_in" | ||
| ] | ||
| } | ||
| } | ||
| }); | ||
|
|
||
| // Template C | ||
| expect(templates[2]).toEqual({ | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": [ | ||
| "biolink:Drug" | ||
| ] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories": [ | ||
| "biolink:Disease" | ||
| ] | ||
| }, | ||
| "un": { | ||
| "categories": [ | ||
| "biolink:Gene" | ||
| ] | ||
| }, | ||
| "nc": { | ||
| "categories": [ | ||
| "biolink:Gene" | ||
| ] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "sub_c": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "nc", | ||
| "predicates": [ | ||
| "biolink:regulates", | ||
| "biolink:regulated_by", | ||
| "biolink:affects", | ||
| "biolink:affected_by", | ||
| "biolink:interacts_with", | ||
| "biolink:associated_with" | ||
| ] | ||
| }, | ||
| "c_un": { | ||
| "subject": "nc", | ||
| "object": "un", | ||
| "predicates": [ | ||
| "biolink:regulates", | ||
| "biolink:regulated_by", | ||
| "biolink:affects", | ||
| "biolink:affected_by", | ||
| "biolink:interacts_with" | ||
| ] | ||
| }, | ||
| "un_obj": { | ||
| "subject": "un", | ||
| "object": "creativeQueryObject", | ||
| "predicates": [ | ||
| "biolink:gene_associated_with_condition", | ||
| "biolink:biomarker_for", | ||
| "biolink:affects", | ||
| "biolink:contributes_to" | ||
| ] | ||
| } | ||
| } | ||
| }); | ||
| }); | ||
| }); |