Updating test coverage checks

biometryhub · May 22, 2024 · 6703b94 · 6703b94
1 parent 45f627b
commit 6703b94
Showing 1 changed file with 8 additions and 36 deletions.
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -19,50 +19,22 @@ jobs:
     runs-on: ubuntu-22.04
     env:
       RSPM: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"
-      vsni_LICENSE: ${{ secrets.vsni_LICENSE }}
+      # vsni_LICENSE: ${{ secrets.vsni_LICENSE }}
 
     steps:
       - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - name: Set up RSPM
-        run: |
-          echo "options(repos = c(CRAN = 'https://packagemanager.rstudio.com/all/__linux__/focal/latest'))" >> ~/.Rprofile.site
-          echo "options(HTTPUserAgent = sprintf('R/%s R (%s)', getRversion(), paste(getRversion(), R.version['platform'], R.version['arch'], R.version['os'])))" >> ~/.Rprofile.site
-        shell: bash
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-        shell: Rscript {0}
-
-      - name: Get R and OS version
-        id: get-version
-        run: |
-          cat("##[set-output name=os-version;]", sessionInfo()$running, "\n", sep = "")
-          cat("##[set-output name=r-version;]", R.Version()$version.string, sep = "")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        uses: actions/cache@v3
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{ inputs.cache-version }}-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-
+          use-public-rspm: true
 
-      - name: Install dependencies
-        run: |
-          install.packages(c("remotes"))
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("covr")
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, any::covr
+          needs: check
 
-      - name: Create and populate .Renviron file
-        run: echo vsni_LICENSE="vsni_LICENSE" >> ~/.Renviron
+      # - name: Create and populate .Renviron file
+      #   run: echo vsni_LICENSE="vsni_LICENSE" >> ~/.Renviron
 
       # - name: Licence ASreml
       #   run: |