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Regenerate artifacts from information_resource_registry.yaml
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actions-user committed Mar 28, 2024
1 parent 2225912 commit df2d2a7
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2 changes: 1 addition & 1 deletion project/information_resource_registry.py
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@@ -1,5 +1,5 @@
# Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-03-21T16:47:47
# Generation date: 2024-03-28T17:02:02
# Schema: Information-Resource-Registry-Schema
#
# id: https://w3id.org/biolink/information_resource_registry.yaml
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2 changes: 1 addition & 1 deletion project/jsonld/information_resource_registry.context.jsonld
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@@ -1,7 +1,7 @@
{
"comments": {
"description": "Auto generated by LinkML jsonld context generator",
"generation_date": "2024-03-21T16:47:45",
"generation_date": "2024-03-28T17:02:01",
"source": "information_resource_registry.yaml"
},
"@context": {
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4 changes: 2 additions & 2 deletions project/jsonld/information_resource_registry.jsonld
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Expand Up @@ -612,9 +612,9 @@
],
"metamodel_version": "1.7.0",
"source_file": "information_resource_registry.yaml",
"source_file_date": "2024-03-21T16:47:02",
"source_file_date": "2024-03-28T17:01:09",
"source_file_size": 7882,
"generation_date": "2024-03-21T16:47:46",
"generation_date": "2024-03-28T17:02:01",
"@type": "SchemaDefinition",
"@context": [
"project/jsonld/information_resource_registry.context.jsonld",
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60 changes: 30 additions & 30 deletions project/owl/information_resource.owl.ttl
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Expand Up @@ -39,71 +39,71 @@ biolink:information_resource_registry.yaml.owl.ttl a owl:Ontology ;
infores:InformationResource a owl:Class ;
rdfs:label "InformationResource" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:knowledge_level ],
owl:allValuesFrom infores:InformationResourceStatusEnum ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:description ],
owl:allValuesFrom xsd:string ;
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:status ],
owl:onProperty infores:synonym ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:agent_type ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:allValuesFrom infores:KnowledgeLevelEnum ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:synonym ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:xref ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:allValuesFrom infores:InformationResourceStatusEnum ;
owl:onProperty infores:status ],
owl:minCardinality 0 ;
owl:onProperty infores:xref ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:name ],
owl:minCardinality 0 ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:allValuesFrom infores:AgentTypeEnum ;
owl:onProperty infores:agent_type ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:agent_type ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:synonym ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:minCardinality 1 ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:agent_type ],
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:allValuesFrom infores:AgentTypeEnum ;
owl:onProperty infores:agent_type ],
owl:maxCardinality 1 ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:xref ],
owl:allValuesFrom xsd:string ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:allValuesFrom infores:KnowledgeLevelEnum ;
owl:onProperty infores:knowledge_level ],
linkml:ClassDefinition ;
skos:altLabel "knowledgebase" ;
skos:definition "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ;
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34 changes: 17 additions & 17 deletions project/shacl/information_resource_registry.shacl.ttl
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Expand Up @@ -20,43 +20,43 @@ infores:InformationResource a sh:NodeShape ;
sh:description "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ;
sh:ignoredProperties ( rdf:type ) ;
sh:property [ sh:datatype xsd:string ;
sh:description "A free-text description of an entity or attribute." ;
sh:maxCount 1 ;
sh:order 5 ;
sh:path rdfs:comment ],
[ sh:datatype xsd:string ;
sh:description "A human-readable name for an attribute or entity." ;
sh:maxCount 1 ;
sh:order 1 ;
sh:path rdfs:label ],
[ sh:description "The type of agent that supports an edge or node. This is a general categorization of the type of agent that supports a statement, and is not intended to be a comprehensive description of the agent. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the agent type would be \"publication\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "not_provided" "computational_model" ) ;
sh:maxCount 1 ;
sh:order 7 ;
sh:path infores:agent_type ],
[ sh:description "the status of the infores identifier, the default is \"released\"" ;
sh:in ( "released" "deprecated" "draft" "modified" ) ;
sh:maxCount 1 ;
sh:order 0 ;
sh:path infores:status ],
[ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "curated" "predicted" "text_mined" "correlation" "observed" "other" "mixed" ) ;
[ sh:description "The type of agent that supports an edge or node. This is a general categorization of the type of agent that supports a statement, and is not intended to be a comprehensive description of the agent. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the agent type would be \"publication\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "not_provided" "computational_model" ) ;
sh:maxCount 1 ;
sh:order 6 ;
sh:path infores:knowledge_level ],
sh:order 7 ;
sh:path infores:agent_type ],
[ sh:datatype xsd:string ;
sh:description "A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" ;
sh:maxCount 1 ;
sh:minCount 1 ;
sh:order 2 ;
sh:path infores:id ],
[ sh:datatype xsd:string ;
sh:description "A free-text description of an entity or attribute." ;
sh:maxCount 1 ;
sh:order 5 ;
sh:path rdfs:comment ],
sh:description "Alternate human-readable names for a thing" ;
sh:order 4 ;
sh:path infores:synonym ],
[ sh:datatype xsd:string ;
sh:description "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references." ;
sh:order 3 ;
sh:path infores:xref ],
[ sh:datatype xsd:string ;
sh:description "Alternate human-readable names for a thing" ;
sh:order 4 ;
sh:path infores:synonym ] ;
[ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "curated" "predicted" "text_mined" "correlation" "observed" "other" "mixed" ) ;
sh:maxCount 1 ;
sh:order 6 ;
sh:path infores:knowledge_level ] ;
sh:targetClass infores:InformationResource .

2 changes: 1 addition & 1 deletion src/information_resource_registry/datamodel/information_resource_registry.py
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@@ -1,5 +1,5 @@
# Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-03-21T16:47:54
# Generation date: 2024-03-28T17:02:10
# Schema: Information-Resource-Registry-Schema
#
# id: https://w3id.org/biolink/information_resource_registry.yaml
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