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Regenerate artifacts from infores_catalog.yaml
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@actions-user
actions-user committed Oct 7, 2024
1 parent 683088a commit 3c5f924
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Showing 6 changed files with 62 additions and 62 deletions.
2 changes: 1 addition & 1 deletion project/information_resource_registry.py
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# Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-10-07T22:21:43
# Generation date: 2024-10-07T22:28:29
# Schema: Information-Resource-Registry-Schema
#
# id: https://w3id.org/biolink/information_resource_registry.yaml
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2 changes: 1 addition & 1 deletion project/jsonld/information_resource_registry.context.jsonld
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{
"comments": {
"description": "Auto generated by LinkML jsonld context generator",
"generation_date": "2024-10-07T22:21:43",
"generation_date": "2024-10-07T22:28:29",
"source": "information_resource_registry.yaml"
},
"@context": {
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4 changes: 2 additions & 2 deletions project/jsonld/information_resource_registry.jsonld
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Expand Up @@ -647,9 +647,9 @@
],
"metamodel_version": "1.7.0",
"source_file": "information_resource_registry.yaml",
"source_file_date": "2024-10-07T22:20:41",
"source_file_date": "2024-10-07T22:27:33",
"source_file_size": 11239,
"generation_date": "2024-10-07T22:21:43",
"generation_date": "2024-10-07T22:28:29",
"@type": "SchemaDefinition",
"@context": [
"project/jsonld/information_resource_registry.context.jsonld",
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62 changes: 31 additions & 31 deletions project/owl/information_resource.owl.ttl
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Expand Up @@ -12,10 +12,10 @@
infores:InformationResourceContainer a owl:Class ;
rdfs:label "InformationResourceContainer" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:allValuesFrom infores:InformationResource ;
owl:onProperty infores:information_resources ],
[ a owl:Restriction ;
owl:allValuesFrom infores:InformationResource ;
owl:minCardinality 0 ;
owl:onProperty infores:information_resources ],
linkml:ClassDefinition ;
skos:definition "A collection of information resources" ;
Expand Down Expand Up @@ -65,70 +65,70 @@ infores:InformationResource a owl:Class ;
rdfs:label "InformationResource" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:agent_type ],
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:agent_type ],
owl:allValuesFrom infores:KnowledgeLevelEnum ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:xref ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:synonym ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:name ],
owl:onProperty infores:agent_type ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:maxCardinality 1 ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:allValuesFrom infores:KnowledgeLevelEnum ;
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:knowledge_level ],
owl:allValuesFrom infores:InformationResourceStatusEnum ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:synonym ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:status ],
owl:onProperty infores:knowledge_level ],
[ a owl:Restriction ;
owl:allValuesFrom infores:AgentTypeEnum ;
owl:onProperty infores:agent_type ],
owl:allValuesFrom xsd:string ;
owl:onProperty infores:xref ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:id ],
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:agent_type ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty infores:xref ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:name ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:name ],
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:maxCardinality 1 ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty infores:id ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty infores:xref ],
owl:minCardinality 0 ;
owl:onProperty infores:description ],
[ a owl:Restriction ;
owl:allValuesFrom infores:InformationResourceStatusEnum ;
owl:minCardinality 0 ;
owl:onProperty infores:status ],
[ a owl:Restriction ;
owl:allValuesFrom infores:AgentTypeEnum ;
owl:onProperty infores:agent_type ],
linkml:ClassDefinition ;
skos:altLabel "knowledgebase" ;
skos:definition "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ;
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52 changes: 26 additions & 26 deletions project/shacl/information_resource_registry.shacl.ttl
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Expand Up @@ -20,48 +20,48 @@ infores:InformationResource a sh:NodeShape ;
sh:description "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ;
sh:ignoredProperties ( rdf:type ) ;
sh:property [ sh:datatype xsd:string ;
sh:description "Alternate human-readable names for a thing" ;
sh:nodeKind sh:Literal ;
sh:order 4 ;
sh:path infores:synonym ],
[ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "knowledge_assertion" "statistical_association" "prediction" "observation" "not_provided" "logical_entailment" "mixed" "other" ) ;
sh:maxCount 1 ;
sh:order 6 ;
sh:path infores:knowledge_level ],
[ sh:datatype xsd:string ;
sh:description "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references." ;
sh:nodeKind sh:Literal ;
sh:order 3 ;
sh:path infores:xref ],
[ sh:datatype xsd:string ;
sh:description "A human-readable name for an attribute or entity." ;
sh:maxCount 1 ;
sh:nodeKind sh:Literal ;
sh:order 1 ;
sh:path rdfs:label ],
[ sh:datatype xsd:string ;
sh:description "A free-text description of an entity or attribute." ;
sh:maxCount 1 ;
sh:nodeKind sh:Literal ;
sh:order 5 ;
sh:path rdfs:comment ],
[ sh:description "the status of the infores identifier, the default is \"released\"" ;
sh:in ( "released" "deprecated" "draft" "modified" ) ;
sh:maxCount 1 ;
sh:order 0 ;
sh:path infores:status ],
[ sh:datatype xsd:string ;
sh:description "A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" ;
sh:maxCount 1 ;
sh:minCount 1 ;
sh:nodeKind sh:Literal ;
sh:order 2 ;
sh:path infores:id ],
[ sh:datatype xsd:string ;
sh:description "A human-readable name for an attribute or entity." ;
[ sh:description "the status of the infores identifier, the default is \"released\"" ;
sh:in ( "released" "deprecated" "draft" "modified" ) ;
sh:maxCount 1 ;
sh:nodeKind sh:Literal ;
sh:order 1 ;
sh:path rdfs:label ],
[ sh:datatype xsd:string ;
sh:description "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references." ;
sh:nodeKind sh:Literal ;
sh:order 3 ;
sh:path infores:xref ],
sh:order 0 ;
sh:path infores:status ],
[ sh:description "The type of agent that supports an edge or node. This is a general categorization of the type of agent that supports a statement, and is not intended to be a comprehensive description of the agent. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the agent type would be \"publication\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "manual_agent" "not_provided" "automated_agent" "data_analysis_pipeline" "computational_model" "text_mining_agent" "image_processing_agent" "manual_validation_of_automated_agent" ) ;
sh:maxCount 1 ;
sh:order 7 ;
sh:path infores:agent_type ],
[ sh:datatype xsd:string ;
sh:description "Alternate human-readable names for a thing" ;
sh:nodeKind sh:Literal ;
sh:order 4 ;
sh:path infores:synonym ],
[ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ;
sh:in ( "knowledge_assertion" "statistical_association" "prediction" "observation" "not_provided" "logical_entailment" "mixed" "other" ) ;
sh:maxCount 1 ;
sh:order 6 ;
sh:path infores:knowledge_level ] ;
sh:path infores:agent_type ] ;
sh:targetClass infores:InformationResource .

2 changes: 1 addition & 1 deletion src/information_resource_registry/datamodel/information_resource_registry.py
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# Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-10-07T22:21:47
# Generation date: 2024-10-07T22:28:33
# Schema: Information-Resource-Registry-Schema
#
# id: https://w3id.org/biolink/information_resource_registry.yaml
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