Anndata concatentation + mapping integration #469

	name: CI

	on:
	pull_request:
	branches: [ main ]
	push:
	branches: [ main ]


	jobs:
	test:
	runs-on: ubuntu-latest
	environment: 'Test CI'

	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: 3.11

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	- name: Install dependencies
	run: \|
	poetry install
	poetry install -E 'podcast xinference'

	- name: Run tests and generate coverage report
	run: poetry run coverage run -m pytest test --ignore=./volumes
	shell: bash

	- name: Generate coverage badge
	if: (github.event_name == 'push' && github.ref == 'refs/heads/main') \|\| (github.event_name == 'pull_request' && github.event.action == 'closed' && github.base_ref == 'refs/heads/main' && github.event.pull_request.merged == true)
	run: poetry run coverage-badge -f -o docs/coverage/coverage.svg
	shell: bash

	- name: Commit changes
	if: (github.event_name == 'push' && github.ref == 'refs/heads/main') \|\| (github.event_name == 'pull_request' && github.event.action == 'closed' && github.base_ref == 'refs/heads/main' && github.event.pull_request.merged == true)
	uses: s0/git-publish-subdir-action@develop
	env:
	REPO: self
	BRANCH: coverage
	FOLDER: docs/coverage
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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