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gtdbtk: use fastani >= 1.32, as per #36934 #52772

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merged 9 commits into from
Dec 22, 2024
Merged

gtdbtk: use fastani >= 1.32, as per #36934 #52772

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29cabcd
gtdbtk - use fastani >= 1.32, as per #36934
dslarm Dec 12, 2024
fdf922a
Bump the build
dslarm Dec 12, 2024
302b9b5
fastani: version syntax - remove space
dslarm Dec 12, 2024
b4d1911
Merge branch 'master' into gtdbtk
dslarm Dec 12, 2024
fdbc6b5
Merge branch 'master' into gtdbtk
dslarm Dec 12, 2024
772b0ba
gtdbtk: add setuptools - pip fails on x86_64 otherwise
dslarm Dec 12, 2024
96f1a5b
gtdbtk: add linux-aarch64
dslarm Dec 12, 2024
16da84c
gtdbtk: note missing package for linux-aarch64
dslarm Dec 12, 2024
e0428f6
Update recipes/gtdbtk/meta.yaml
bgruening Dec 22, 2024
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8 changes: 6 additions & 2 deletions recipes/gtdbtk/meta.yaml
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Expand Up @@ -7,7 +7,7 @@ source:
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
sha256: e67bab2c8f3e47c7242c70236c78e85bb9dc4721636bbf5044b171f18f22b1f7
build:
number: 1
number: 2
noarch: python
entry_points:
- gtdbtk = gtdbtk.__main__:main
Expand All @@ -17,13 +17,14 @@ requirements:
host:
- pip
- python >=3.6
- setuptools
run:
- dendropy >=4.1.0
- python >=3.6
- prodigal >=2.6.2
- hmmer 3.*
- pplacer >=1.1.alpha17
- fastani 1.32
- fastani >=1.32
- fasttree >=2.1.9
- numpy >=1.9.0
- mash >=2.0
Expand All @@ -48,6 +49,9 @@ about:
license_file: 'LICENSE'
summary: 'A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.'
extra:
additional-platforms:
# requires mash and pplacer
# - linux-aarch64
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The recipe is noarch.
There is no need of additional platforms here

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We should lint this somehow.

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identifiers:
- doi:10.1093/bioinformatics/btz848
recipe-maintainers:
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