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name: PR to Bulk branch | ||
on: | ||
pull_request: | ||
branches: | ||
- bulk | ||
types: [opened, synchronize, reopened] | ||
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concurrency: | ||
group: build-${{ github.event.pull_request.number || github.head_ref }} | ||
cancel-in-progress: true | ||
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jobs: | ||
build_and_test-osx: | ||
name: Bulk PR OSX | ||
runs-on: macos-13 # amd64 | ||
strategy: | ||
fail-fast: true | ||
max-parallel: 13 | ||
steps: | ||
- uses: actions/checkout@v4 | ||
with: | ||
fetch-depth: 0 | ||
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- name: set path | ||
run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | ||
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- name: Fetch conda install script | ||
run: | | ||
wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | ||
- name: Set up bioconda-utils | ||
run: bash install-and-set-up-conda.sh | ||
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- name: Configure conda | ||
run: bash configure-conda.sh | ||
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- name: Build and Test | ||
env: | ||
# Mimic circleci | ||
OSTYPE: "darwin" | ||
CI: "true" | ||
run: | | ||
set -e | ||
eval "$(conda shell.bash hook)" | ||
conda activate bioconda | ||
# Clean up lingering build artifacts | ||
rm -f /opt/mambaforge/envs/bioconda/conda-bld/osx-64/*.tar.bz2 | ||
# The SDK isn't actually cached, so reinstall it | ||
run_conda_forge_build_setup | ||
if [ -z "$GITHUB_BASE_REF" ] ; then | ||
export GITHUB_BASE_REF="bulk" | ||
fi | ||
git fetch origin "$GITHUB_BASE_REF" | ||
bioconda-utils build recipes config.yml \ | ||
--lint \ | ||
--git-range origin/"$GITHUB_BASE_REF" HEAD | ||
- name: Prepare artifacts | ||
run: | | ||
( | ||
rm -rf /tmp/artifacts | ||
mkdir -p /tmp/artifacts/packages | ||
cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0 | ||
find -name .cache | xargs rm -rf || true | ||
for n in index.html channeldata.json osx-64 noarch; do | ||
cp -rv $n /tmp/artifacts/packages || true | ||
done | ||
) || true | ||
- name: Archive packages | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: osx-64-packages | ||
path: | | ||
/tmp/artifacts |
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pr: | ||
branches: | ||
exclude: | ||
- bulk | ||
autoCancel: true | ||
trigger: | ||
branches: | ||
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