extract-sv-reads: add linux-aarch64 build (#52734)

* extract-sv-reads: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Try to use htslib 1.19+ for aarch64 --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
bioconda · Dec 11, 2024 · 6d1b60f · 6d1b60f
1 parent 3f4daed
commit 6d1b60f
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Showing 2 changed files with 19 additions and 6 deletions.
diff --git a/recipes/extract-sv-reads/build.sh b/recipes/extract-sv-reads/build.sh
@@ -1,4 +1,7 @@
 #!/bin/bash
+
+set -xe
+
 mkdir -p build
 cd build
 cmake \
@@ -8,5 +11,5 @@ cmake \
     -DHTSLIB_USE_LZMA=1 \
     -DHTSLIB_USE_BZ2=1 \
     ..
-make
+make -j"${CPU_COUNT}"
 make install
diff --git a/recipes/extract-sv-reads/meta.yaml b/recipes/extract-sv-reads/meta.yaml
@@ -1,14 +1,18 @@
+{% set name="extract-sv-reads" %}
 {% set version="1.3.0" %}
+
 package:
-  name: extract-sv-reads
+  name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 5
+  number: 6
   skip: True # [osx]
+  run_exports:
+    {{ pin_subpackage(name, max_pin="x") }}
 
 source:
-  url: https://github.com/hall-lab/extract_sv_reads/archive/v1.3.0.tar.gz
+  url: https://github.com/hall-lab/extract_sv_reads/archive/v{{ version }}.tar.gz
   sha256: e19e21b84cc6229b414440e3f219bf0fa4779f6dec1877498cd3244f0140977f
   patches:
     - 0001-Unvendor-HTSlib-and-Boost.patch
@@ -20,10 +24,12 @@ requirements:
     - cmake
   host:
     - perl
-    - htslib 1.9.*
+    - htslib 1.9.* # [not aarch64]
+    - htslib 1.19.* # [aarch64]
     - boost-cpp
   run:
-    - htslib 1.9.*
+    - htslib 1.9.* # [not aarch64]
+    - htslib 1.19.* # [aarch64]
     - boost-cpp
 
 test:
@@ -34,5 +40,9 @@ test:
 about:
   home: https://github.com/hall-lab/extract_sv_reads
   license: MIT
+  license_file: LICENSE.txt
   summary:  Tool for extracting splitter or discordant reads from a BAM or CRAM file.
 
+extra:
+  additional-platforms:
+    - linux-aarch64