Update iced to 0.5.13 (#48526)

* Update iced to 0.5.13 * add run_exports * Try to fix the build. Add linux-aarch64 Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Update iced to 0.5.13 * Update build.sh * Update meta.yaml * clean up recipe * update tests * edit patch --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> Co-authored-by: Alicia A. Evans <[email protected]> Co-authored-by: aliciaaevans <[email protected]> Co-authored-by: Martin Tzvetanov Grigorov <[email protected]> Co-authored-by: Joshua Zhuang <[email protected]> Co-authored-by: mencian <[email protected]>
bioconda · Jan 22, 2025 · 5715639 · 5715639
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diff --git a/recipes/iced/0001-setup.py.patch b/recipes/iced/0001-setup.py.patch
@@ -0,0 +1,29 @@
+diff --git a/setup.py b/setup.py
+index 7e8b201..cb9a3b9 100644
+--- a/setup.py
++++ b/setup.py
+@@ -1,6 +1,7 @@
+ import os
+ import sys
+-from setuptools import Extension, setup, find_packages
++from setuptools import Extension, setup, find_namespace_packages
++from Cython.Build import cythonize
+ import numpy as np
+
+
+@@ -38,13 +39,13 @@ setup(
+         "Topic :: Utilities",
+         "License :: OSI Approved :: BSD License",
+     ],
+-    packages=find_packages(where="."),
++    packages=find_namespace_packages(where="."),
+     ext_modules=[
+         Extension(name="iced._filter_",
+                   sources=["iced/_filter_.pyx"],
+                   include_dirs=[np.get_include()]
+         ),
+-        Extension(name="iced.normalization/_normalization_",
++        Extension(name="iced.normalization._normalization_",
+                   sources=["iced/normalization/_normalization_.pyx"],
+                   include_dirs=[np.get_include()]
+                   )],
diff --git a/recipes/iced/build.sh b/recipes/iced/build.sh
diff --git a/recipes/iced/build_failure.linux-64.yaml b/recipes/iced/build_failure.linux-64.yaml
diff --git a/recipes/iced/build_failure.osx-64.yaml b/recipes/iced/build_failure.osx-64.yaml
diff --git a/recipes/iced/meta.yaml b/recipes/iced/meta.yaml
@@ -1,43 +1,58 @@
 {% set name = "iced" %}
-{% set version = "0.5.10" %}
-{% set sha256 = "77240573bfb552d33301cf5b22f597f50c04e03c8ccea4dcc88fee884e394fd0" %}
+{% set version = "0.5.13" %}
+{% set sha256 = "455ecb3464cc64e0fdec776bc7b0f0cae9d729539be6865ac9d5436c5e77e6b9" %}
 
 package:
   name: "{{ name }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/hiclib/{{ name }}/archive/v{{ version }}.tar.gz
+  url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/iced-{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - 0001-setup.py.patch
 
 build:
-  number: 3
+  number: 0
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  entry_points:
+    - ice = iced.scripts.ice:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
   host:
     - pip
     - python
     - cython
-    - numpy
-    - scipy >=0.13.3
+    - numpy >=1.16.0
+    - scipy >=0.19.0
   run:
     - python
     - {{ pin_compatible('numpy') }}
-    - scipy >=0.13.3
+    - scipy >=0.19.0
     - pandas
     - scikit-learn
     - matplotlib-base
 
 test:
   imports:
     - iced
+  commands:
+    - ice --help
 
 about:
-  home: https://github.com/hiclib/iced
-  license: new BSD
+  home: "https://github.com/hiclib/iced"
+  license: "BSD-3-Clause"
   license_family: BSD
   license_file: LICENSE
   summary: "The python module iced implements the ICE normalization of hic data."
+  dev_url: "https://github.com/hiclib/iced"
+  doc_url: "https://members.cbio.mines-paristech.fr/~nvaroquaux/iced"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64