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Update rseqc to v5.0.4 (#51414)
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mencian authored Oct 15, 2024
1 parent 9697ab3 commit 11c494d
Showing 1 changed file with 18 additions and 20 deletions.
38 changes: 18 additions & 20 deletions recipes/rseqc/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,55 +1,53 @@
{% set name = "RSeQC" %}
{% set version = "5.0.3" %}
{% set name = "rseqc" %}
{% set version = "5.0.4" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
sha256: 869f542e08f50c8874280d58e4f5565857b0aebac66a8eceef3f23016175061e
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/rseqc-{{ version }}.tar.gz
sha256: b7f3996f3de0b0b0a09eec949281a8f3e665a20827fcb3cbbd7546b94574a088

build:
number: 3
skip: True # [py2k]
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir --use-pep517 -vvv"
number: 0
noarch: python
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
run_exports:
- {{ pin_subpackage(name|lower, max_pin="x") }}

requirements:
build:
- {{ compiler('c') }}
host:
- pip
- python
- cython >=0.12
- nose
- python >=3.5
- setuptools
run:
- bx-python
- numpy
- pybigwig
- pysam
- python
- r-base
- pandas
- python >=3.5
- logomaker

test:
imports:
- qcmodule
- qcmodule.SAM
- psyco_full
commands:
- read_distribution.py 2>&1 | grep Usage > /dev/null
- geneBody_coverage.py 2>&1 | grep Usage > /dev/null

about:
home: http://rseqc.sourceforge.net/
license: GNU General Public License v2 (GPLv2)
summary: 'RNA-seq QC Package'
home: "https://rseqc.sourceforge.net"
license: "GPL-2.0-or-later"
summary: 'QC package for RNA-seq data.'
license_family: GPL2
license_file: LICENSE
dev_url: "https://rseqc.sourceforge.net"
doc_url: "https://rseqc.sourceforge.net/#usage-information"

extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:rseqc
- doi:10.1093/bioinformatics/bts356

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