Bulk: testing for failures #2
Workflow file for this run
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| name: PR to Bulk branch | |
| on: | |
| pull_request: | |
| branches: | |
| - bulk | |
| types: [opened, synchronize, reopened] | |
| concurrency: | |
| group: build-${{ github.event.pull_request.number || github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build_and_test-osx: | |
| name: Bulk PR OSX | |
| runs-on: macos-13 # amd64 | |
| strategy: | |
| fail-fast: true | |
| max-parallel: 13 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: set path | |
| run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
| - name: Fetch conda install script | |
| run: | | |
| wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | |
| - name: Set up bioconda-utils | |
| run: bash install-and-set-up-conda.sh | |
| - name: Configure conda | |
| run: bash configure-conda.sh | |
| - name: Build and Test | |
| env: | |
| # Mimic circleci | |
| OSTYPE: "darwin" | |
| CI: "true" | |
| run: | | |
| set -e | |
| eval "$(conda shell.bash hook)" | |
| conda activate bioconda | |
| # Clean up lingering build artifacts | |
| rm -f /opt/mambaforge/envs/bioconda/conda-bld/osx-64/*.tar.bz2 | |
| # The SDK isn't actually cached, so reinstall it | |
| run_conda_forge_build_setup | |
| if [ -z "$GITHUB_BASE_REF" ] ; then | |
| export GITHUB_BASE_REF="bulk" | |
| fi | |
| git fetch origin "$GITHUB_BASE_REF" | |
| bioconda-utils build recipes config.yml \ | |
| --lint \ | |
| --git-range origin/"$GITHUB_BASE_REF" HEAD | |
| - name: Prepare artifacts | |
| run: | | |
| ( | |
| rm -rf /tmp/artifacts | |
| mkdir -p /tmp/artifacts/packages | |
| cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0 | |
| find -name .cache | xargs rm -rf || true | |
| for n in index.html channeldata.json osx-64 noarch; do | |
| cp -rv $n /tmp/artifacts/packages || true | |
| done | |
| ) || true | |
| - name: Archive packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: osx-64-packages | |
| path: | | |
| /tmp/artifacts |