Vks4git/gb (#60)

* Pedantic build and CI

* Removed redundant os

* Cache test

* Modified CI

* Version 0.1.3.25. Pedantic build and CI

.github/workflows/build.yaml

@@ -0,0 +1,27 @@
+name: build
+
+on: [push]
+
+jobs:
+  build:
+    name: Pedantic Build - ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        ghc: ["8.10.4"]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: haskell/actions/setup@v1
+        with:
+          ghc-version: ${{ matrix.ghc }}
+          enable-stack: true
+          stack-version: 'latest'
+      - uses: actions/[email protected]
+        name: Cache ~/.stack
+        with:
+          path: ~/.stack
+          key: ${{ runner.os }}-${{ matrix.ghc }}-stack
+      - run: stack build --pedantic --system-ghc --test --bench --no-run-tests --no-run-benchmarks
+
+

.github/workflows/test.yaml

@@ -0,0 +1,31 @@
+name: test
+
+on: 
+  pull_request:
+  push:
+    branches:
+      - master
+
+jobs:
+  test:
+    name: Unit tests - ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        ghc: ["8.10.4"]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: haskell/actions/setup@v1
+        with:
+          ghc-version: ${{ matrix.ghc }}
+          enable-stack: true
+          stack-version: 'latest'
+      - uses: actions/[email protected]
+        name: Cache ~/.stack
+        with:
+          path: ~/.stack
+          key: ${{ runner.os }}-${{ matrix.ghc }}-stack
+      - run: stack test --system-ghc --pedantic
+
+

ChangeLog.md

@@ -2,7 +2,11 @@
 
 ## [Unreleased]
 
-## [0.1.3.23] - 2021-07-06
+## [0.1.3.25] - 2021-09-15
+### Added
+- Pedantic build and CI
+
+## [0.1.3.24] - 2021-09-10
 ### Changed
 - GB parser made more verbose.
 

package.yaml

@@ -1,5 +1,5 @@
 name:                cobot-io
-version:             0.1.3.24
+version:             0.1.3.25
 github:              "biocad/cobot-io"
 license:             BSD3
 category:            Bio
@@ -28,7 +28,7 @@ dependencies:
 - attoparsec >= 0.10 && < 0.15
 - binary >= 0.8.3.0 && < 1.0
 - mtl >= 2.2.1 && < 2.3.0
-- hyraxAbif >= 0.2.3.15 && < 0.2.4.0
+- hyraxAbif >= 0.2.3.27 && < 0.2.4.0
 - containers >= 0.5.7.1 && < 0.7
 - http-conduit >= 2.3 && < 2.4
 - array >= 0.5 && < 0.6

src/Bio/GB/Parser.hs

@@ -8,11 +8,9 @@ import Bio.GB.Type                (Feature (..), Form (..), GenBankSequence (..)
                                    Meta (..), Reference (..), Source (..), Version (..))
 import Bio.Sequence               (MarkedSequence, Range, markedSequence)
 import Control.Applicative        ((<|>))
-import Control.Monad.Fail         (fail)
 import Data.Attoparsec.Combinator (manyTill)
 import Data.Attoparsec.Text       (Parser, char, decimal, digit, endOfInput, endOfLine, letter,
-                                   many', many1', satisfy, string, takeWhile, takeWhile1, try,
-                                   (<?>))
+                                   many', many1', satisfy, string, takeWhile, takeWhile1, (<?>))
 import Data.Bifunctor             (bimap)
 import Data.Char                  (isAlphaNum, isSpace, isUpper)
 import Data.Functor               (($>))

stack.yaml

@@ -1,12 +1,12 @@
-resolver: lts-15.5
+resolver: lts-17.5
 
 packages:
 - .
 
 extra-deps:
 - data-msgpack-0.0.13
 - data-msgpack-types-0.0.3
-- hyraxAbif-0.2.3.21
+- hyraxAbif-0.2.3.27
 
 ghc-options:
   $locals: -Wall -fdiagnostics-color=always