Autogenerated literator docs for v0.1.1

docs/src/main/scala/go.scala.md

@@ -19,9 +19,23 @@ trait AnyTerm extends Any {
   def ID: String
   def name: String
   def definition: String
-  def namespace: String // TODO finite known set of namespaces
+  def namespace: Namespace
   def comments: Seq[String]
 }
+```
+
+
+See:
+
+- http://geneontology.org/page/ontology-structure#oneorthree
+- http://geneontology.org/page/ontology-structure#essential
+
+
+```scala
+sealed trait Namespace
+case object cellular_component extends Namespace
+case object molecular_function extends Namespace
+case object biological_process extends Namespace
 
 sealed trait AnyRel {
 

docs/src/main/scala/oboxml/parser.scala.md

@@ -9,7 +9,7 @@ import scala.compat.java8.OptionConverters._
 case class GOOBOXML(xml: Elem) extends AnyVal with AnyGO {
 
   def terms: Seq[XmlTerm] =
-    (xml \ "term").filter( term => (term \ "isObsolete").isEmpty ) map XmlTerm
+    (xml \ "term").filter( term => (term \ "isObsolete").isEmpty ) map { XmlTerm(_) }
 
   def isA: Seq[IsA] =
     terms flatMap { _.isA }
@@ -38,8 +38,8 @@ case class XmlTerm(val xml: Node) extends AnyVal with AnyTerm {
   def comments: Seq[String] =
     (xml \ "comment") map { _.text }
 
-  def namespace: String =
-    (xml \ "namespace").head.text
+  def namespace: Namespace =
+    XmlTerm namespaceFrom (xml \ "namespace").head.text
 
   def definition: String =
     (xml \ "def" \ "defstr").head.text
@@ -72,6 +72,19 @@ case class XmlTerm(val xml: Node) extends AnyVal with AnyTerm {
       .map( relFromRelationship )
 }
 
+case object XmlTerm {
+
+  def namespaceFrom(rep: String): Namespace = {
+    println { rep };
+    rep match {
+      case "cellular_component" => cellular_component
+      case "molecular_function" => molecular_function
+      case "biological_process" => biological_process
+    }
+  }
+
+}
+
 case class Rel(sourceID: String, targetID: String)
 
 ```