pash run configs

.github/workflows/tests.yml

@@ -21,13 +21,21 @@ jobs:
       - name: Install dependencies
         run: |
           sudo apt update && sudo apt install -y --no-install-recommends \
-            curl wget unzip
+            curl wget unzip git \
+            autoconf automake libtool build-essential gawk pkg-config \
+            python3-pip
+          pip3 install scikit-learn kaggle
+          wget https://raw.githubusercontent.com/binpash/pash/main/scripts/up.sh
+          sh up.sh
+          export PASH_TOP="$PWD/pash/"
 
       - name: Set execute permissions for main.sh
         run: chmod +x main.sh
 
       - name: Run Benchmark for ${{ matrix.benchmark }}
-        run: ./main.sh ${{ matrix.benchmark }} --small
+        run: |
+          export PASH_TOP="$PWD/pash/"
+          "$PASH_TOP/pa.sh" -c "./main.sh ${{ matrix.benchmark }} --small"
 
       - name: Upload .out and .err files
         uses: actions/upload-artifact@v4

Dockerfile

@@ -10,13 +10,31 @@ RUN apt update && apt install -y --no-install-recommends \
     curl \
     wget \
     unzip \
+    git \
     samtools \
     minimap2 \
     bcftools \
     python3-pip \
     vim \
-    ffmpeg unrtf imagemagick libarchive-tools libncurses5-dev libncursesw5-dev zstd liblzma-dev libbz2-dev zip unzip nodejs tcpdump \
-    git
+    ffmpeg \
+    unrtf \
+    imagemagick \
+    libarchive-tools \
+    libncurses5-dev \
+    libncursesw5-dev \
+    zstd \
+    liblzma-dev \
+    libbz2-dev \
+    zip \
+    unzip \
+    nodejs \
+    tcpdump \
+    autoconf \
+    automake \
+    libtool \
+    build-essential \
+    gawk \
+    pkg-config
 
 RUN pip3 install --break-system-packages \
     scikit-learn \