[TOIL-BDG-15] Add end-to-end variant calling benchmark.

Resolves #15.
bigdatagenomics · Aug 31, 2017 · 6ea693e · 6ea693e
1 parent 47bc02e
commit 6ea693e
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diff --git a/setup.py b/setup.py
@@ -87,7 +87,8 @@ def check_provided(distribution, min_version, max_version=None, optional=False):
             'toil-bdg-mkdups-benchmark = toil_bdg.benchmarking.single_node.mkdups:main',
             'toil-bdg-sort-benchmark = toil_bdg.benchmarking.single_node.sort:main',
             'toil-bdg-ri-benchmark = toil_bdg.benchmarking.single_node.realign_indels:main',
-            'toil-bdg-bqsr-benchmark = toil_bdg.benchmarking.single_node.bqsr:main']})
+            'toil-bdg-bqsr-benchmark = toil_bdg.benchmarking.single_node.bqsr:main',
+            'toil-bdg-vc-benchmark = toil_bdg.benchmarking.single_node.align_and_call:main']})
 
 
 class PyTest(TestCommand):