Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] microelectrode electrophysiology specification (BEP032) #1705

Open
wants to merge 36 commits into
base: master
Choose a base branch
from
Open

[ENH] microelectrode electrophysiology specification (BEP032) #1705

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
36 commits
Select commit Hold shift + click to select a range
7ec5d5e
Add first BEP032 objects
JuliaSprenger Nov 9, 2022
2f393ca
Add ephys modality, start adding _channels but ran into a question on…
yarikoptic Feb 14, 2024
648781a
Add _acq- to ephys, add _channels and _coords
yarikoptic Mar 6, 2024
d3c9996
Draft for probes TSV file
TheChymera Mar 6, 2024
08c92cd
Fix preferably typo
yarikoptic Mar 15, 2024
e2030ac
Comment out not yet defined iephys and add ephys to datatypes where i…
TheChymera Apr 17, 2024
53f1087
Added probes file
TheChymera Apr 17, 2024
fa648fe
Describe modality/datatype as "Microelectrode Electrophysiology"
yarikoptic Apr 18, 2024
eef67df
Remove iephys entirely since I think it was just inspired by DANDI la…
yarikoptic Apr 18, 2024
27547f9
Initial content for ephys document and initial filename template tree
yarikoptic Apr 18, 2024
a6ae5e2
Merge remote-tracking branch 'upstream/master' into bep032
Remi-Gau Apr 19, 2024
9a20e4b
pacify pre-commit
Remi-Gau Apr 19, 2024
7609276
add to TOC
Remi-Gau Apr 19, 2024
9be41f9
semantic line break and fix
Remi-Gau Apr 19, 2024
983975a
Addressed minor left over lint complains
yarikoptic Apr 19, 2024
1afdc40
Add "Microelectrode" specialization for Electrophysiology in the cont…
yarikoptic Apr 19, 2024
6b39d64
Fix up for bad latin and adjust wording a bit
yarikoptic Apr 19, 2024
f08b163
Replace fancy unicode “ with simple " .
yarikoptic Apr 19, 2024
73012b3
Use redirected to www.datalad.org and www.nwb.org website URLs and fe…
yarikoptic Apr 19, 2024
a46e439
BEP032: ephys -> microephys with {icephys, ecephys} modalities/suffix…
yarikoptic Jun 5, 2024
05e9611
Clarify wording and do mention `microephys` as shorthand for Microele…
yarikoptic Oct 16, 2024
7ddeb75
Adding markdown portion of the Bep032 (#1960)
Peyman-N Nov 20, 2024
2b9e757
[ENH] Schema changes related to BEP032 (#1826)
ree-gupta Nov 20, 2024
6b11f54
Merge remote-tracking branch 'origin/master' into bep032
yarikoptic Nov 20, 2024
1abebea
Some fixes of formatting and URLs
yarikoptic Dec 17, 2024
2a3757d
Merge remote-tracking branch 'origin/master' into bep032
yarikoptic Dec 18, 2024
3f4e941
Adjusted some formatting and some wording at the beginning of the sec…
yarikoptic Dec 18, 2024
0853f8a
Few fixes to the schema from review
yarikoptic Dec 18, 2024
800ba58
Adopting the markdown line lengths for BEP032 (#2012)
Peyman-N Dec 18, 2024
46c91b0
Fix tabulation in a .tsv + convert to use yaw, pitch, roll
yarikoptic Dec 18, 2024
a884604
Add types and min/max for roll,pitch,yaw + fix typo for microephysCha…
yarikoptic Dec 19, 2024
262d5b1
Replace Pharmaceuticals with already existing fields and fix few more…
yarikoptic Dec 19, 2024
756c07c
Merge remote-tracking branch 'origin/master' into bep032
yarikoptic Dec 19, 2024
7bc17cc
Make use of merged fancing for tsvs and add a note about spotted Phar…
yarikoptic Dec 19, 2024
d5fef1f
Remove some "bad latin"
yarikoptic Dec 19, 2024
039fbb3
Fix a link to be final, before redirects
yarikoptic Dec 19, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions mkdocs.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@ nav:
- Near-Infrared Spectroscopy: modality-specific-files/near-infrared-spectroscopy.md
- Motion: modality-specific-files/motion.md
- Magnetic Resonance Spectroscopy: modality-specific-files/magnetic-resonance-spectroscopy.md
- Microelectrode Electrophysiology: modality-specific-files/microelectrode-electrophysiology.md
- Derivatives:
- BIDS Derivatives: derivatives/introduction.md
- Common data types and metadata: derivatives/common-data-types.md
Expand Down
672 changes: 672 additions & 0 deletions src/modality-specific-files/microelectrode-electrophysiology.md
View file
Open in desktop

Large diffs are not rendered by default.

Loading
Loading