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[SCHEMA] Add remaining enum definitions #1640

Merged
merged 11 commits into from
Nov 7, 2023
6 changes: 4 additions & 2 deletions src/schema/meta/context.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -301,7 +301,8 @@ context:
description: 'String representing the unit of voxel spacing.'
type: string
enum:
- 'unknown'
- $ref: objects.enums.unknown.value
# TODO: Add definitions for these values. (perhaps don't specify)
- 'meter'
- 'mm'
- 'um'
Expand All @@ -310,7 +311,8 @@ context:
description: 'String representing the unit of inter-volume intervals.'
type: string
enum:
- 'unknown'
- $ref: objects.enums.unknown.value
# TODO: Add definitions for these values. (perhaps don't specify)
- 'sec'
- 'msec'
- 'usec'
Expand Down
52 changes: 27 additions & 25 deletions src/schema/objects/columns.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -64,13 +64,13 @@ component:
or `quat_x`, `quat_y`, `quat_z`, `quat_w` for quaternion orientation channels.
type: string
enum:
- x
- y
- z
- quat_x
- quat_y
- quat_z
- quat_w
- $ref: objects.enums.x.value
- $ref: objects.enums.y.value
- $ref: objects.enums.z.value
- $ref: objects.enums.quat_x.value
- $ref: objects.enums.quat_y.value
- $ref: objects.enums.quat_z.value
- $ref: objects.enums.quat_w.value
- n/a
detector__channels:
name: detector
Expand Down Expand Up @@ -162,6 +162,7 @@ handedness:
For "ambidextrous", use one of these values: `ambidextrous`, `a`, `A`, `AMBIDEXTROUS`,
`Ambidextrous`.
type: string
# TODO: Add definitions for these values. (perhaps don't specify)
enum:
- left
- l
Expand Down Expand Up @@ -425,15 +426,15 @@ sample_type:
[ENCODE Biosample Type](https://www.encodeproject.org/profiles/biosample_type).
type: string
enum:
- cell line
- in vitro differentiated cells
- primary cell
- cell-free sample
- cloning host
- tissue
- whole organisms
- organoid
- technical sample
- $ref: objects.enums.cell_line.value
- $ref: objects.enums.in_vitro_differentiated_cells.value
- $ref: objects.enums.primary_cell.value
- $ref: objects.enums.cell_free_sample.value
- $ref: objects.enums.cloning_host.value
- $ref: objects.enums.tissue.value
- $ref: objects.enums.whole_organisms.value
- $ref: objects.enums.organoid.value
- $ref: objects.enums.technical_sample.value
sampling_frequency:
name: sampling_frequency
display_name: Channel sampling frequency
Expand Down Expand Up @@ -461,6 +462,7 @@ sex:

For "other", use one of these values: `other`, `o`, `O`, `OTHER`, `Other`.
type: string
# TODO: Add definitions for these values. (perhaps don't specify)
enum:
- male
- m
Expand Down Expand Up @@ -544,8 +546,8 @@ status:
Description of noise type SHOULD be provided in `[status_description]`.
type: string
enum:
- good
- bad
- $ref: objects.enums.good.value
- $ref: objects.enums.bad.value
- n/a
status_description:
name: status_description
Expand Down Expand Up @@ -686,8 +688,8 @@ type__optodes:
The type of the optode.
type: string
enum:
- source
- detector
- $ref: objects.enums.source
- $ref: objects.enums.detector
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- n/a
units:
name: units
Expand Down Expand Up @@ -731,11 +733,11 @@ volume_type:
the `volume_type` of each volume in the corresponding `*_asl.nii[.gz]` file.
type: string
enum:
- control
- label
- m0scan
- deltam
- cbf
- $ref: objects.enums.control.value
- $ref: objects.enums.label.value
- $ref: objects.enums.m0scan.value
- $ref: objects.enums.deltam.value
- $ref: objects.enums.cbf.value
wavelength_nominal:
name: wavelength_nominal
display_name: Wavelength nominal
Expand Down
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