Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] Add noRF suffix for MR excitation-free noise scans #1451

Merged
merged 17 commits into from
Apr 24, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 19 additions & 0 deletions src/schema/objects/suffixes.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -687,6 +687,25 @@ nirs:
value: nirs
display_name: Near Infrared Spectroscopy
description: Data associated with a Shared Near Infrared Spectroscopy Format file.
noRF:
value: noRF
display_name: No Radio Frequency Excitation Scan
description: |
An MR noise scan often acquired alongside another MR scan.

These noise scans are acquired by disabling the radio frequency excitation,
while maintaining all other parameters from the associated scan.
These can be acquired using some other sequence with RF excitation removed
or as part of sequences that turns off RF at the beginning or end of a run.
For example a `bold` scan where a few volumes are acquired with RF off.
There is no consistent DICOM denotation for these scans.

If multiple sequences with different suffixes but otherwise the same entities have `noRF`
sequences, they SHOULD be disambiguated using the modality entity
(for example, `mod-bold_noRF.nii.gz` and `mod-cbv_noRF.nii`).

`noRF` are typically used to estimate properties of the scanner and
tsalo marked this conversation as resolved.
Show resolved Hide resolved
sequence that are independent from the object being imaged.
optodes:
value: optodes
display_name: Optodes
Expand Down
8 changes: 8 additions & 0 deletions src/schema/rules/files/raw/func.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,14 @@ func:
part: optional
chunk: optional

norf:
$ref: rules.files.raw.func.func
suffixes:
- noRF
entities:
$ref: rules.files.raw.func.func.entities
modality: optional

phase:
suffixes:
- phase # deprecated
Expand Down