Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support entity definition TSV files #1706

Open
tsalo opened this issue Feb 15, 2024 · 2 comments
Open

Support entity definition TSV files #1706

tsalo opened this issue Feb 15, 2024 · 2 comments
Labels
enhancement New feature or request inheritance

Comments

@tsalo
Copy link
Member

tsalo commented Feb 15, 2024

Your idea

In #1613, we added a descriptions.tsv file to the Derivatives spec. The file describes different desc-<label> definitions used in a dataset. I believe this general structure can be applied to other entities, especially acq-<label> (acquisitions.tsv), rec-<label> (reconstructions.tsv), proc-<label> (processings.tsv?), and recording-<label> (recordings.tsv).

@sappelhoff
Copy link
Member

I believe this general structure can be applied to other entities

This is in fact, how the idea for descriptions.tsv originated when we discussed in in Copenhagen 2023. There are some minor inconsistencies, like participants.tsv, which should rather have been subjects.tsv (corresponding to the sub entity).

I am generally in favor of adding support like this wherever it is practically meaningful (that is, if we see a concrete use case).

@ericearl
Copy link
Collaborator

ericearl commented Aug 22, 2024

Just an FYI since @tsalo linked me this to read: Our BEP036 is going to propose a change to allow sessions.tsv at the top-level so long as it has the participant_id, the session_id, and a sessions.json describing the "Levels" of session_id. This will allow imaging data sessions and phenotype-only sessions to live together peacefully/in-harmony. 😄

Pinging my fellow BEP-ers here too if they want to read it and/or mention anything else about sessions.tsv.

@SamGuay @surchs @Arshitha

P.S. I love this Issue's idea.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request inheritance
Projects
None yet
Development

No branches or pull requests

3 participants