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[FIX] wrong usage of DOI in SourceDatasets example (#1361)
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* [FIX] BIDS-URI example contained a faulty 'file://' in relative path

* revert earlier 'fix', add doi fix

* try fix links

* FIX: remove faulty file:// from example
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sappelhoff authored Dec 22, 2022
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4 changes: 2 additions & 2 deletions src/appendices/coordinate-systems.md
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Expand Up @@ -197,8 +197,8 @@ Unless specified explicitly in the sidecar file in the

| **Coordinate System** | **Description** | **Used by** | **Reference** |
| ---------------------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------ | ---------------------------------------------------------------------------------------------------------------------------------- |
| ICBM452AirSpace | Reference space defined by the "average of 452 T1-weighted MRIs of normal young adult brains" with "linear transforms of the subjects into the atlas space using a 12-parameter affine transformation" | | [https://www.loni.usc.edu/research/atlases](http://web.archive.org/web/20220802122857/https://www.loni.usc.edu/research/atlases) |
| ICBM452Warp5Space | Reference space defined by the "average of 452 T1-weighted MRIs of normal young adult brains" "based on a 5th order polynomial transformation into the atlas space" | | [https://www.loni.usc.edu/research/atlases](http://web.archive.org/web/20220802122857/https://www.loni.usc.edu/research/atlases) |
| ICBM452AirSpace | Reference space defined by the "average of 452 T1-weighted MRIs of normal young adult brains" with "linear transforms of the subjects into the atlas space using a 12-parameter affine transformation" | | [https://www.loni.usc.edu/research/atlases](https://www.loni.usc.edu/research/atlases) |
| ICBM452Warp5Space | Reference space defined by the "average of 452 T1-weighted MRIs of normal young adult brains" "based on a 5th order polynomial transformation into the atlas space" | | [https://www.loni.usc.edu/research/atlases](https://www.loni.usc.edu/research/atlases) |
| IXI549Space | Reference space defined by the average of the "549 (...) subjects from the IXI dataset" linearly transformed to ICBM MNI 452. | SPM12 | [https://brain-development.org/](https://brain-development.org/) |
| fsaverage | The `fsaverage` is a **dual template** providing both volumetric and surface coordinates references. The volumetric template corresponds to a FreeSurfer variant of `MNI305` space. The `fsaverage` atlas also defines a surface reference system (formerly described as fsaverage\[3\|4\|5\|6\|sym\]). | Freesurfer | |
| fsaverageSym | The `fsaverage` is a **dual template** providing both volumetric and surface coordinates references. The volumetric template corresponds to a FreeSurfer variant of `MNI305` space. The `fsaverageSym` atlas also defines a symmetric surface reference system (formerly described as `fsaveragesym`). | Freesurfer | |
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2 changes: 1 addition & 1 deletion src/appendices/qmri.md
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Expand Up @@ -282,7 +282,7 @@ A guide for using macros can be found at
],
"SourceDatasets": [
{
"DOI": "DOI 10.17605/OSF.IO/K4BS5",
"DOI": "doi:10.17605/OSF.IO/K4BS5",
"URL": "https://osf.io/k4bs5/",
"Version": "1"
}
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2 changes: 1 addition & 1 deletion src/common-principles.md
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Expand Up @@ -259,7 +259,7 @@ field in `dataset_description.json` of each subdirectory of `derivatives` to:

```JSON
{
"SourceDatasets": [ {"URL": "file://../../rawdata/"} ]
"SourceDatasets": [ {"URL": "../../rawdata/"} ]
}
```

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