move tests

bids-standard · Apr 13, 2024 · 37a4433 · 37a4433
1 parent 3a10402
commit 37a4433
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Showing 3 changed files with 108 additions and 141 deletions.
diff --git a/tests/test_transformers/test_transformers_compute.m b/tests/test_transformers/test_transformers_compute.m
@@ -16,7 +16,7 @@
 
 function write_definition(input, output, trans, stack)
   test_name = stack.name;
-  %     write_test_definition_to_file(input, output, trans, test_name, 'compute');
+  % write_test_definition_to_file(input, output, trans, test_name, 'compute');
 end
 
 %% multi step

diff --git a/tests/test_transformers/test_transformers_munge.m b/tests/test_transformers/test_transformers_munge.m
@@ -22,10 +22,6 @@ function write_definition(input, output, trans, stack, suffix)
 
 end
 
-%% single step
-
-% ordered alphabetically
-
 function test_Assign_with_target_attribute()
 
   transformers = struct('Name', 'Assign', ...
@@ -145,6 +141,113 @@ function test_Replace_string_in_numeric_output()
 
 end
 
+function test_multi_touch()
+
+  % GIVEN
+  tsvFile = fullfile(dummy_data_dir(), 'sub-01_task-TouchBefore_events.tsv');
+  tsv_content = bids.util.tsvread(tsvFile);
+
+  transformers{1} = struct('Name', 'Threshold', ...
+                           'Input', 'duration', ...
+                           'Binarize', true, ...
+                           'Output', 'tmp');
+  transformers{2} = struct('Name', 'Replace', ...
+                           'Input', 'tmp', ...
+                           'Output', 'duration', ...
+                           'Attribute', 'duration', ...
+                           'Replace', struct('key', 1, ...
+                                             'value', 1));
+  transformers{3} = struct('Name', 'Delete', ...
+                           'Input', {{'tmp'}});
+
+  % WHEN
+  [new_content, json] = bids.transformers(transformers, tsv_content);
+
+  % THEN
+  % TODO assert whole content
+  assertEqual(fieldnames(tsv_content), fieldnames(new_content));
+  assertEqual(json, struct('Transformer', ['bids-matlab_' bids.internal.get_version], ...
+                           'Instructions', {transformers}));
+
+end
+
+function test_multi_combine_columns()
+
+  % GIVEN
+  tsvFile = fullfile(dummy_data_dir(), 'sub-01_task-FaceRepetitionBefore_events.tsv');
+  tsv_content = bids.util.tsvread(tsvFile);
+
+  transformers{1} = struct('Name', 'Filter', ...
+                           'Input', 'face_type', ...
+                           'Query', 'face_type==famous', ...
+                           'Output', 'Famous');
+  transformers{2} = struct('Name', 'Filter', ...
+                           'Input', 'repetition_type', ...
+                           'Query', 'repetition_type==1', ...
+                           'Output', 'FirstRep');
+  transformers{3} = struct('Name', 'And', ...
+                           'Input', {{'Famous', 'FirstRep'}}, ...
+                           'Output', 'tmp');
+  transformers{4} = struct('Name', 'Replace', ...
+                           'Input', 'tmp', ...
+                           'Output', 'trial_type', ...
+                           'Replace', struct('key', 'tmp_1', ...
+                                             'value', 'FamousFirstRep'));
+  transformers{5} = struct('Name', 'Delete', ...
+                           'Input', {{'tmp', 'Famous', 'FirstRep'}});
+
+  % WHEN
+  data = tsv_content;
+  new_content = bids.transformers(transformers, data);
+
+  % THEN
+  % TODO assert whole content
+  assertEqual(fieldnames(tsv_content), fieldnames(new_content));
+  assertEqual(unique(new_content.trial_type), {'face'});
+
+end
+
+function test_multi_complex_filter_with_and()
+
+  %% GIVEN
+  tsvFile = fullfile(dummy_data_dir(), 'sub-01_task-FaceRepetitionBefore_events.tsv');
+  tsv_content = bids.util.tsvread(tsvFile);
+
+  transformers{1} = struct('Name', 'Filter', ...
+                           'Input', 'face_type', ...
+                           'Query', 'face_type==famous', ...
+                           'Output', 'Famous');
+  transformers{2} = struct('Name', 'Filter', ...
+                           'Input', 'repetition_type', ...
+                           'Query', 'repetition_type==1', ...
+                           'Output', 'FirstRep');
+
+  % WHEN
+  data = tsv_content;
+  new_content = bids.transformers(transformers, data);
+
+  % THEN
+  assert(all(ismember({'Famous'; 'FirstRep'}, fieldnames(new_content))));
+  assertEqual(sum(strcmp(new_content.Famous, 'famous')), 52);
+
+  if ~isempty(which('nansum'))
+    assertEqual(bids.internal.nansum(new_content.FirstRep), 52);
+  end
+
+  %% GIVEN
+  transformers{3} = struct('Name', 'And', ...
+                           'Input', {{'Famous', 'FirstRep'}}, ...
+                           'Output', 'FamousFirstRep');
+
+  % WHEN
+  data = tsv_content;
+  new_content = bids.transformers(transformers, data);
+
+  % THEN
+  assertEqual(sum(new_content.FamousFirstRep), 26);
+
+end
+
 %% Helper functions
 
 function cfg = set_up()

diff --git a/tests/test_transformers/test_transformers_munge_multi.m b/tests/test_transformers/test_transformers_munge_multi.m