Make possible to run on specified datasets, address some shellcheck concerns (quotes) #1192
Workflow file for this run
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| name: validate_datasets | |
| on: | |
| push: | |
| branches: ['**'] | |
| pull_request: | |
| branches: ['**'] | |
| create: | |
| branches: [master] | |
| tags: ['**'] | |
| schedule: | |
| - cron: "0 4 * * 1" | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| bids-validator: [stable, main, dev, legacy] | |
| runs-on: ${{ matrix.platform }} | |
| env: | |
| TZ: Europe/Berlin | |
| FORCE_COLOR: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Node.js | |
| if: matrix.bids-validator == 'legacy' | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18 | |
| - uses: denoland/setup-deno@v2 | |
| if: matrix.bids-validator != 'legacy' | |
| with: | |
| deno-version: v2.x | |
| - name: Install BIDS validator (stable) | |
| if: matrix.bids-validator == 'stable' | |
| run: | | |
| deno install -Agf -n bids-validator jsr:@bids/validator | |
| shell: bash | |
| - name: Install BIDS validator (main) | |
| if: matrix.bids-validator == 'main' | |
| run: | | |
| # If unmerged validator PRs are needed for testing, you can use | |
| # https://github.com/<FORK>/bids-validator/raw/<BRANCH>/bids-validator/src/bids-validator.ts | |
| deno install -Agf https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js | |
| shell: bash | |
| - name: Install BIDS validator (dev) | |
| if: matrix.bids-validator == 'dev' | |
| run: | | |
| git clone -b dev https://github.com/bids-standard/bids-validator/ ../bids-validator | |
| cd ../bids-validator | |
| deno compile -A -o $HOME/.deno/bin/bids-validator src/bids-validator.ts | |
| shell: bash | |
| - name: Install BIDS validator (legacy) | |
| if: "matrix.bids-validator == 'legacy'" | |
| run: | | |
| npm install -g bids-validator | |
| - name: Display versions and environment information | |
| run: | | |
| echo $TZ | |
| date | |
| which deno && echo "deno\n----" && deno --version || true | |
| echo "node\n----"; node --version | |
| echo "npm\n----"; npm --version | |
| echo "bids-validator"; bids-validator --version | |
| shell: bash | |
| - name: Check that no large files are present | |
| if: "matrix.bids-validator == 'stable'" | |
| run: | | |
| echo "Checking for big files ..." | |
| found=`find . -not -path "./.git*" -type f -size +500k` | |
| if [ "$found" == "" ] | |
| then | |
| echo "No big files present, great!" | |
| else | |
| echo "Found big files:" | |
| echo "$found" | |
| exit 1; | |
| fi | |
| shell: bash | |
| - name: Skip legacy validation for post-legacy datasets | |
| run: for DS in mrs_* dwi_deriv; do touch $DS/.SKIP_VALIDATION; done | |
| if: matrix.bids-validator == 'legacy' | |
| shell: bash | |
| - name: Skip stable validation for datasets with unreleased features | |
| run: for DS in dwi_deriv; do touch $DS/.SKIP_VALIDATION; done | |
| if: matrix.bids-validator != 'dev' | |
| shell: bash | |
| - name: Set BIDS_SCHEMA variable for dev version | |
| if: matrix.bids-validator == 'dev' | |
| # When proposing new features, schema changes may be necessary. | |
| # Update this URL to the schema.json from PRs to the spec, when needed. | |
| # If this variable is unset, dev will generally track the latest development | |
| # release of https://jsr.io/@bids/schema | |
| run: echo BIDS_SCHEMA=https://bids-specification.readthedocs.io/en/latest/schema.json >> $GITHUB_ENV | |
| - name: Validate all BIDS datasets using bids-validator | |
| run: | | |
| cat ./run_tests.sh | |
| ./run_tests.sh | |
| shell: bash |