[ENH] BEP022 - Magnetic Resonance Spectroscopy #1055
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: validate_datasets | ||
| on: | ||
| push: | ||
| branches: ['**'] | ||
| pull_request: | ||
| branches: ['**'] | ||
| create: | ||
| branches: [master] | ||
| tags: ['**'] | ||
| schedule: | ||
| - cron: "0 4 * * 1" | ||
| concurrency: | ||
| group: ${{ github.ref }} | ||
| cancel-in-progress: true | ||
| jobs: | ||
| build: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| platform: [ubuntu-latest, macos-latest, windows-latest] | ||
| bids-validator: [master, stable, master-deno] | ||
| runs-on: ${{ matrix.platform }} | ||
| env: | ||
| TZ: Europe/Berlin | ||
| FORCE_COLOR: 1 | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Node.js | ||
| if: "matrix.bids-validator == 'stable' || matrix.bids-validator == 'master'" | ||
| uses: actions/setup-node@v4 | ||
| with: | ||
| node-version: 18 | ||
| - name: Install BIDS validator (stable) | ||
| if: "matrix.bids-validator == 'stable'" | ||
| run: | | ||
| npm install -g bids-validator | ||
| - name: Install BIDS validator (master) | ||
| if: "matrix.bids-validator == 'master'" | ||
| run: | | ||
| pushd .. | ||
| # Get npm 7+ | ||
| npm install -g npm | ||
| git clone --depth 1 https://github.com/bids-standard/bids-validator | ||
| cd bids-validator | ||
| # Generate the full development node_modules | ||
| npm clean-install | ||
| # Build & bundle the bids-validator CLI package | ||
| npm -w bids-validator run build | ||
| # Generate a package to install globally | ||
| npm -w bids-validator pack | ||
| # Install the package globally | ||
| bash -c "npm install -g bids-validator-*.tgz" | ||
| popd | ||
| - uses: denoland/setup-deno@v1 | ||
| if: "matrix.bids-validator == 'master-deno'" | ||
| with: | ||
| deno-version: v1.x | ||
| - name: Install BIDS validator (master deno build) | ||
| if: "matrix.bids-validator == 'master-deno'" | ||
| run: | | ||
| LOCAL_BIN=$HOME/.local/bin | ||
| VALIDATOR=$LOCAL_BIN/bids-validator | ||
| mkdir -p $LOCAL_BIN | ||
| export PATH="$LOCAL_BIN:$PATH" | ||
| echo PATH="$PATH" >> $GITHUB_ENV | ||
| echo -e '#!/usr/bin/env'" -S deno run --allow-read --allow-write --allow-env --allow-net --allow-run\nimport 'https://github.com/bids-standard/bids-validator/raw/master/bids-validator/src/bids-validator.ts'" > $VALIDATOR | ||
| chmod +x $VALIDATOR | ||
| bids-validator --version | ||
| shell: bash | ||
| - name: Display versions and environment information | ||
| run: | | ||
| echo $TZ | ||
| date | ||
| echo "npm"; npm --version | ||
| echo "node"; node --version | ||
| echo "bids-validator"; bids-validator --version | ||
| shell: bash | ||
| - name: Check that no large files are present | ||
| if: "matrix.bids-validator == 'stable'" | ||
| run: | | ||
| echo "Checking for big files ..." | ||
| found=`find . -not -path "./.git*" -type f -size +500k` | ||
| if [ "$found" == "" ] | ||
| then | ||
| echo "No big files present, great!" | ||
| else | ||
| echo "Found big files:" | ||
| echo "$found" | ||
| exit 1; | ||
| fi | ||
| shell: bash | ||
| - name: Validate all BIDS datasets using bids-validator | ||
| run: | | ||
| cat ./run_tests.sh | ||
| ./run_tests.sh | ||
| shell: bash | ||
| env: | ||
| BIDS_SCHEMA=https://bids-specification--1875.org.readthedocs.build/en/1875/schema.json | ||
|
Check failure on line 112 in .github/workflows/validate_datasets.yml
|
||
