moved euler tests to group2

bids-apps · Nov 29, 2017 · 4a2e98a · 4a2e98a
1 parent 5e88af0
commit 4a2e98a
Showing 1 changed file with 4 additions and 7 deletions.
diff --git a/circle.yml b/circle.yml
@@ -28,20 +28,17 @@ test:
   override:
     # print version
     - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} --version
+    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} -h
     - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --license_file=/license.txt --stages autorecon1 && cat ${HOME}/outputs1/sub-01/scripts/recon-all.done :
         timeout: 21600
     - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --steps cross-sectional --session_label test --license_file=/license.txt --stages autorecon1 && cat ${HOME}/outputs2/sub-01_ses-test/scripts/recon-all.done :
         timeout: 21600
     # group2 tests
-    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group2 --license_file=/license.txt  && mkdir -p ${HOME}/outputs1/ && sudo mv ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs1/ && cat ${HOME}/outputs1/00_group2_stats_tables/lh.aparc.thickness.tsv :
+    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group2 --license_file=/license.txt  && mkdir -p ${HOME}/outputs1/ && sudo mv ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs1/ && cat ${HOME}/outputs1/00_group2_stats_tables/lh.aparc.thickness.tsv && cat ${HOME}/outputs1/00_group2_stats_tables/euler.tsv:
         timeout: 21600
-    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group2 --license_file=/license.txt  && mkdir -p ${HOME}/outputs2/ && sudo mv ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs2/ && cat ${HOME}/outputs2/00_group2_stats_tables/lh.aparc.thickness.tsv :
-        timeout: 21600
-    # group3 tests
-    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group3 --license_file=/license.txt  && mkdir -p ${HOME}/outputs1/ && sudo mv ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs1/ && cat ${HOME}/outputs1/00_group3_quality/euler.tsv :
-        timeout: 21600
-    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group3 --license_file=/license.txt  && mkdir -p ${HOME}/outputs2/ && sudo mv ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs2/ && cat ${HOME}/outputs2/00_group3_quality/euler.tsv :
+    - docker run -ti --rm --read-only -v $PWD/license.txt:/license.txt -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group2 --license_file=/license.txt  && mkdir -p ${HOME}/outputs2/ && sudo mv ${HOME}/data/ds114_test2_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs2/ && cat ${HOME}/outputs2/00_group2_stats_tables/lh.aparc.thickness.tsv && cat ${HOME}/outputs2/00_group2_stats_tables/euler.tsv:
         timeout: 21600
+
 deployment:
   hub:
     owner: BIDS-Apps