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1. CellProfiler/CellProfiler CellProfiler/CellProfiler Public

   An open-source application for biological image analysis

   Python 929 379

2. CellProfiler/CellProfiler-Analyst CellProfiler/CellProfiler-Analyst Public

   Open-source software for exploring and analyzing large, high-dimensional image-derived data.

   Python 148 72

3. CellProfiler/CellProfiler-plugins CellProfiler/CellProfiler-plugins Public

   Community-contributed and experimental CellProfiler modules.

   Python 59 67

4. DistributedScience/Distributed-CellProfiler DistributedScience/Distributed-CellProfiler Public

   Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

   Python 40 25

5. CellProfiler/tutorials CellProfiler/tutorials Public

   CellProfiler tutorial pipelines and images

   Jupyter Notebook 85 86

6. broadinstitute/imaging-platform-pipelines broadinstitute/imaging-platform-pipelines Public

   Cell Painting and other pipelines from the Imaging Platform

   15 13